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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGGCATGTGCGCATCCGTTTTTCAATGAACTCCGTGAGCCAAATGCTCGTCTTCCAAATGGCCGACCTCTACCACCGTTGTTCAACTTCAAACAAGAGgtatgttaaaccattccaaaatcacttttccttcaaccaaacataactgaatgtgcatacagttactcaatctgttagctctctctttgactattgaaacag

Basic information

species Arabidopsis thaliana
transcript AT2G30980.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G30980.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv12s0028g01810.t01 (Vitis vinifera), 5'ss of exon 11
CGAGGCATGTGCGCATCCGTTTTTCAATGAACTCCGTGAGCCAAATGCTCGTCTTCCAAATGGCCGACCTCTACCACCGTTGTTCAACTTCAAACAAGAGgtatg---ttaaaccattccaaaatcacttttccttcaaccaaacataactgaatgtgc-atacagttactcaatctgttagctct-ctctttgactattgaaacag
                               ||| | || || ||||| || |||||||||||||| ||| |||| ||| |||||||||| ||||| || |||||   |  |||  ||     || | || | |  |||      |  | |  || |   |  || |  |    | | |||    |  || |  | | ||       
-------------------------------CTCAGGGAACCTAATGCCCGCCTTCCAAATGGCCGCCCTTTACCCCCGCTGTTCAACTTTAAACAGGAAgtatgaactggaactgtttatttatta-ttatacaacaatagggaagcaatatatttatgaggcattggcatttttttttaaacgtgttcatcaatttttt------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86079984|gb|DR375741.1|DR375741
EST:     GTCTTCCAAATGGCCGACCTCTACCACCGTTGTTCAACTTCAAACAAGAG                         TTGTCTGGGGCTTCACCGGAGCTTATCAACAGGCTAATACCAGAGCATGTG
genomic: GTCTTCCAAATGGCCGACCTCTACCACCGTTGTTCAACTTCAAACAAGAGgtatgttaaa ... attgaaacagTTGTCTGGGGCTTCACCGGAGCTTATCAACAGGCTAATACCAGAGCATGTG
EST: gi|125235466|gb|EL249551.1|EL249551
EST:     GTCTTCCAAATGGCCGACCTCTACCACCGTTGTTCAACTTCAAACAAGAG                         TTGTCTGGGGCTTCACCGGAGCTTATCAACAGGCTAA
genomic: GTCTTCCAAATGGCCGACCTCTACCACCGTTGTTCAACTTCAAACAAGAGgtatgttaaa ... attgaaacagTTGTCTGGGGCTTCACCGGAGCTTATCAACAGGCTAA