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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTAAGGATCAGAACCATGCAATTTGGAACTGCCCACAATATCAATGAAATTTACGACAGTGTGGATCATGAAGTTGTTCTCTCATTGCTCGTTCACAAGgtaaaagtaatttcatgtttttatctcggctccagcgaaagaaaggaatccattattaatctgctaattatgtatgtattttcataattatttctctgcag

Basic information

species Arabidopsis thaliana
transcript AT2G27460.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G27460.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv06s0080g00510.t01 (Vitis vinifera), 5'ss of exon 11
ATTAAGGATCAGAACCATGCAATTTGGAACTGCCCACAATATCAATGAAATTTACGACAGTGTGGATCATGAAGTTGTTCTCTCATTGCTCGTTCACAAGgtaaaagtaatttcatgtttttatctcggctccagcgaaagaaaggaatccattattaatctgctaattatgtatgtattttcataattatttctctgcag--------------
| | || ||  | ||  |||||| |  | |||| || |||| || |||| |||| |||||||| |||| |||||| ||||| ||| |||| ||||||||||           | || || || ||||  || |   |   ||    | ||| |  ||    | ||  |  |||  | | | ||||  ||    |  || |               
ACTGAGAATTCGGACATTGCAATATTTATCTGCTCAAAATAGCAGTGAACTTTATGACAGTGTTGATCCTGAAGTGGTTCTATCAGTGCTTGTTCACAAGg-----------ttattttcttttctctccttct-tgcttgatgttattccttattttccttactggtattgtg-gcactctcat--tttgcaccatgtaaacaaggaagctcat