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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCATTCTAGGGCAGAAGATATACTGGAGTTGTTGCAGAGCCCTCCTTTTCGTCAACAAGTAGATGCATTTACCTATgtaagcccatctgtgacaatgctgtttccattcttgggtcgatattctaactcaacatctctctctttag

Basic information

species Arabidopsis thaliana
transcript AT2G26590.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G26590.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA08G03080.2 (Glycine max), 5'ss of exon 13
GGTCATTCTAGGGCAGAAGATATACTGGAGTTGTTGCAGAGCCCTCCTTTTCGTCAACAAGTAGATGCATTTACCTATgtaagc---ccatctgtgacaatgctgtttc--cattcttgggtcgatattctaactcaacatctctctctttag--------------
||| | |      ||||||| ||| ||||||||||||||||||| ||||| ||||| ||||||||| | ||||| ||||| ||    |  |   | || |  ||  ||   |||||||      |||| |||| | ||  | | | |   |                
GGTGAATGGTCTCCAGAAGAGATATTGGAGTTGTTGCAGAGCCCACCTTTCCGTCAGCAAGTAGATTCGTTTACTTATgtgagaatgcagtgcctcactactcttatttaacattcttttcaaaatatactaa-taaaggtttttatgcatgtatttattgccgtag

upper sequence: AT2G26590.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA08G03080.3 (Glycine max), 5'ss of exon 11
----------------------GGTCATTCTAGGGCAGAAGATATACTGGAGTTGTTGCAGAGCCCTCCTTTTCGTCAACAAGTAGATGCATTTACCTATgtaag---cccatctgtgacaatgctgtttc--cattcttgggtcgatattctaactcaacatctctctctttag--------------
                      ||| | |      ||||||| ||| ||||||||||||||||||| ||||| ||||| ||||||||| | ||||| ||||| ||    |  |   | || |  ||  ||   |||||||      |||| |||| | ||  | | | |   |                
CATGCAATATTCTTTGATGTAGGGTGAATGGTCTCCAGAAGAGATATTGGAGTTGTTGCAGAGCCCACCTTTCCGTCAGCAAGTAGATTCGTTTACTTATgtgagaatgcagtgcctcactactcttatttaacattcttttcaaaatatactaa-taaaggtttttatgcatgtatttattgccgtag

upper sequence: AT2G26590.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA05G36490.2 (Glycine max), 5'ss of exon 12
GGTCATTCTAGGGCAGAAGATATACTGGAGTTGTTGCAGAGCCCTCCTTTTCGTCAACAAGTAGATGCATTTACCTATgtaagc---ccatctgtgacaatgctgtttcca---ttcttgggtcgatattctaactcaacatctctctctttag--------------
||| | |      ||||||| ||| ||||||||||||||||||| ||||| ||||| ||||||||| | ||||| ||||| ||    |  |   | || |  ||  ||  |   |||||      |||| || | | ||  | | | | | |                
GGTAAATGGTCTCCAGAAGAGATATTGGAGTTGTTGCAGAGCCCACCTTTCCGTCAGCAAGTAGATTCGTTTACTTATgtgagaatgcagtgcctcactactcttatttaacatttcttttcaaaatatacttaataaaggtttttatgtatttatttattgctatag

upper sequence: AT2G26590.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv11s0065g00450.t01 (Vitis vinifera), 5'ss of exon 12
GGTCATTCTAGGGCAGAAGATATACTGGAGTTGTTGCAGAGCCCTCCTTTTCGTCAACAAGTAGATGCATTTACCTATgtaagcccatctgtgacaatgctgtttccattcttgggtcgatattctaactcaacatctctc---tctttag--------------------------------
||||| |  |   |||| ||| || |||||||| |||||||||| |||||||| |||||||||||| ||||||| ||||| ||   || ||   |    || | |||  | ||    |  ||   | | | |   | | |    ||||  |                                
GGTCAATGGAATCCAGAGGATTTATTGGAGTTGCTGCAGAGCCCACCTTTTCGCCAACAAGTAGATTCATTTACTTATgtgagtg-atttgatccccccctctctcccattttcttccattaccgttaattagattgttttggatcttatgagatttagtgtttcccctttgttaataaatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125230010|gb|EL244095.1|EL244095
EST:     AGTTGTTGCAGAGCCCTCCTTTTCGTCAACAAGTAGATGCATTTACCTAT                         GTACTCCGCACAGGACAAATAGATTTGACTCAGTTTGGTATAGACCCAAGT
genomic: AGTTGTTGCAGAGCCCTCCTTTTCGTCAACAAGTAGATGCATTTACCTATgtaagcccat ... ctctctttagGTACTCCGCACAGGACAAATAGATTTGACTCAGTTTGGTATAGACCCAAGT