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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAATGTCGGTCTCCTTGGCCTCACACGAATAGGGAGTAGACGAGTGGTGCAGgtttcaacgtttttcatgatatttttctccatatttggtttgtctttcaaccctctaatcagtcatcttgactaagtatagaaagtagccgttcatgggttttaaatccgcgtgttttcaatgatcttcag

Basic information

species Arabidopsis thaliana
transcript AT2G26510.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G26510.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv18s0001g11260.t01 (Vitis vinifera), 5'ss of exon 11
GGAAAATGTCGGTCTCCTTGGCCTCACACGAATAGGGAGTAGACGAGTGGTGCAGgtttcaacgtttttcatgatatttttctccatatttggtttgtctttcaacc----ctctaatcagtcatcttgactaagtatagaaagtagccgttcatgggttttaaatccgcgtgttttcaatgatcttcag
 |||||||| || |||||||| |||||||  |||||||| ||| | ||||||||| | |||||   ||||||| | || ||||||||||||||| ||| |||         ||     || | ||  |    ||  || |   |      |   ||  | ||  ||     | |  |  ||    |||||
TGAAAATGTGGGCCTCCTTGGACTCACACACATAGGGAGCAGAAGGGTGGTGCAGATATCAACTGCTTTCATGTTCTTCTTCTCCATATTTGgtctgttttttgttttttacttcccccattaattctattaaatcattgcctgggattatcactgaatgtttgattgagttatcctgcat--ctttcag