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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAGAGGCTCGGCTAAACTAAAAAGAATCATGCAAACTATACTTTCCTTGGGCAATGCATTGAACCACGGGACTGCAAGGGgtgagcatatatctattaccgttagactgccaaatacagtatttatctcaaagag

Basic information

species Arabidopsis thaliana
transcript AT2G25050.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G25050.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: LOC_Os02g55150.2 (Oryza sativa), 5'ss of exon 5
GTTAGAGGCTCGGCTAAACTAAAAAGAATCATGCAAACTATACTTTCCTTGGGCAATGCATTGAACCACGGGACTGCAAGGGgtgagcatatatctattaccgttagactgccaaat--acagtat--ttatctcaaagag------------------------------------------
|||||   ||| | ||| || ||  || | |||||||| || ||||| ||||| |||||||| ||||| || ||||||||||||||| |  ||  |||   | | ||| ||  |  |  ||  |||  || |  ||||  |                                          
GTTAGGAACTCTGTTAAGCTTAAGCGAGTGATGCAAACAATTCTTTCGTTGGGAAATGCATTAAACCAAGGAACTGCAAGGGgtgagtaattaagtatgttc-taagattgatatgtttacgatatgatttttgcaaattgatcttccaacatgaagaaatacagtgcacatggtttctcttt

upper sequence: AT2G25050.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA17G33930.1 (Glycine max), 5'ss of exon 11
GTTAGAGGCTCGGCTAAACTAAAAAGAATCATGCAAACTATACTTTCCTTGGGCAATGCATTGAACCACGGGACTGCAAGGGgtgagcata-----tatctattaccgttagactgccaaatacagtatttatct-caaagag---------------------------------------
 | ||    || |  ||  | |||||||||||||| || || |||||  |||| ||||| |||||||| || |||||||| ||||||   |     || |  | ||| ||  ||   || | |   | ||| |   |||| |                                        
ATAAGGAATTCAGTCAAGTTGAAAAGAATCATGCAGACCATTCTTTCTCTGGGTAATGCTTTGAACCATGGAACTGCAAGAGgtgagttaaagctttagcattcaccatttcaccatcagaaatcatgtttgtggacaaataatgtagaaaagtttataatcaaacttggacttctcagata

upper sequence: AT2G25050.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv04s0008g06530.t01 (Vitis vinifera), 5'ss of exon 14
GTTAGAGGCTCGGCTAAACTAAAAAGAATCATGCAAACTATACTTTCCTTGGGCAATGCATTGAACCACGGGACTGCAAGGGgtgagcatatatct---attaccgttagactgccaaatacagtatttatctcaaagag------------------------------------------
 | ||    ||||  ||| | |||||||||||||||||||| |||||  |||| ||||| || ||||| || || ||||| ||||||   |  | |   ||||  ||   | |       |||  ||  ||   |   ||                                          
ATCAGGAATTCGGTCAAATTGAAAAGAATCATGCAAACTATCCTTTCACTGGGAAATGCTTTAAACCATGGAACAGCAAGAGgtgagttgaattgtcggattaatgtcctattcatgttaacatcataaattatatgaagacaaacatataaagtgttactgtataaaataattgatccatc