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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTTTACTTCATTGGGTTTGGGTTCTTCTGTCTGGAGTCACTCGTCAGCATCTGGGTTATTCAGgttccctcctttgctgaatcatttattcatgtagataagttaaaaaggaagaagtggttaacaagttgttgttgttgttgtgtgtgtgtgtgggaacag

Basic information

species Arabidopsis thaliana
transcript AT2G20840.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G20840.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA12G11820.2 (Glycine max), 5'ss of exon 12
ATATTTTACTTCATTGGGTTTGGGTTCTTCTGTCTGGAGTCACTCGTCAGCATCTGGGTTATTCAGgttccctcctttgctgaatcatttattcatgtagataagttaaaaaggaagaagtggttaacaagttgttgttgttgttgtgtgtgtgtgtggga-acag
||||| ||||||||||| ||||| || || ||||| |||||| |  | |||||||||||||| ||||||      |||     || |    || || ||  |  || ||       |||||   |      || ||||| |   | | ||  | | |      |||
ATATTCTACTTCATTGGATTTGGCTTTTTTTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAGgtt------tttataatattaacacttaatctaacttggt-aattctcctgaagttacttgtgtctttttgtt-tgactatttgattttatattttgcag

upper sequence: AT2G20840.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA06G45160.1 (Glycine max), 5'ss of exon 12
ATATTTTACTTCATTGGGTTTGGGTTCTTCTGTCTGGAGTCACTCGTCAGCATCTGGGTTATTCAGgttccctcctttgctgaatcatttattcatgtagataagttaaaaaggaagaagtggttaacaagttgttgttgttgttgtgtgtgtgtgtgggaacag
||||| ||||||||||| |||||  | |||||||| |||||| |  | |||||||||||||| ||||||     | |    | |   |     ||      |   || ||        |||  ||      ||| |  |||  || |   | | ||  |      
ATATTCTACTTCATTGGATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAGgtttttatcatattagcactgtaacaccaacatattctcttgaagttacttgagtcttt--ttgtttgattatgtgcttttaaattt-tgcag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084332|gb|DR380091.1|DR380091
EST:     GGTTTGGGTTCTTCTGTCTGGAGTCACTCGTCAGCATCTGGGTTATTCAG                         CAAGTGTACATGTACTTCAGGGGGAGCGGGAAAGCAGCAGAGATGAAGCAG
genomic: GGTTTGGGTTCTTCTGTCTGGAGTCACTCGTCAGCATCTGGGTTATTCAGgttccctcct ... gtgggaacagCAAGTGTACATGTACTTCAGGGGGAGCGGGAAAGCAGCAGAGATGAAGCAG