1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGAGAAGGATGAAGAAGAAGAGGCAGAGTTCAATGCACAGACCAAGGAACTAGTCAACACACCTCAAGACTTGCCTCCTCAGCTTCTCTTTGTTCACCAAgtaacattcttacttcaactatcattagcttggtttatttgatctatgtatattttgtctgaaaacctcgattatttttttggggaaaaccag
species | Arabidopsis thaliana |
transcript | AT2G19540.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AGTCAACACACCTCAAGACTTGCCTCCTCAGCTTCTCTTTGTTCACCAA GGACAAAAAGATCTGAAGGAACTTCACTGGCACAACCAGATTCCGGGGATEST: gi|164169058|gb|ES194086.1|ES194086
genomic: AGTCAACACACCTCAAGACTTGCCTCCTCAGCTTCTCTTTGTTCACCAAgtaacattct ... ggaaaaccagGGACAAAAAGATCTGAAGGAACTTCACTGGCACAACCAGATTCCGGGGAT
EST: CACCTCAAGACTTGCCTCCTCAGCTTCTCTTTGTTCACCAA GGACAAAAAGATCTGAAGGAACTTCACTGGCEST: gi|86087136|gb|DR382895.1|DR382895
genomic: CACCTCAAGACTTGCCTCCTCAGCTTCTCTTTGTTCACCAAgtaacattct ... ggaaaaccagGGACAAAAAGATCTGAAGGAACTTCACTGGC
EST: TAGTCAACACACCTCAAGACTTGCCTCCTCAGCTTCTCTTTGTTCACCAA GGACAAAAAGATCTGAAGGAACTTCACTGGCACAACCAGATTCCGGGGATG
genomic: TAGTCAACACACCTCAAGACTTGCCTCCTCAGCTTCTCTTTGTTCACCAAgtaacattct ... ggaaaaccagGGACAAAAAGATCTGAAGGAACTTCACTGGCACAACCAGATTCCGGGGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGAAGGATGAAGAAGAAGAGGCAGAGTTCAATGCACAGACCAAGGAACTAGTCAACACACCTCAAGACTTGCCTCCTCAGCTTCTCTTTGTTCACCAAgtaacattcttacttcaactatcattagcttggtttatttgatctatgtatattttgtctgaaaacctcgattatttttttggggaaaaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT