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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGATCCATGTGAAGACTTAACAGCTGATGATATTCGGACTGCAATACAAAATGCAACTGGTCCCAGATCTGCATTATTTGTTCCAGATgtaggtttatctatatccctaagcatgtgggagcatttttttgcttatctgttctttccacatacttattttgcttgagttttttacttttacagcaactctgattagtatctcttgctttcattctcatctgcatag

Basic information

species Arabidopsis thaliana
transcript AT2G14120.3
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G14120.3 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA13G32940.1 (Glycine max), 5'ss of exon 10
---GTTGATCCATGTGAAGACTTAACAGCTGATGATATTCGGACTGCAATACAAAATGCAACTGGTCCCAGATCTGCATTATTTGTTCCAGATgtaggtttatctatatccct-----aagcatgtgggagcat----------ttt-----tttgcttatctgttctttccacatactt----attttgcttgagttt--tttacttttacagcaactctgattagtatctcttgctttcattctcatctgcatag----
   || ||||| ||||||||| |||| | |||||| || || ||||| ||||| ||||| ||||| |||| ||| ||||| ||||||||||| |||||| | | ||  |  ||     ||| |   |    |||          |||     |||  |||  || | |||  | || |||    || ||   ||| |     ||    | | |  || |||       | |   |   | ||||    |  |  ||     
GAGGTGGATCCGTGTGAAGACCTAACTGATGATGACATCCGTACTGCCATACAGAATGCTACTGGGCCCAAATCAGCATTGTTTGTTCCAGAAgtaggtctttttacctttctttttaaagaaaaagaagacatagaaattatatttagaagtttctttagttgatttttgtaaatgctttgctatattctgtgaatccaaatttgcataaaaaaaattctaccctaaaacatgtttatccatttattttcgtgtaatcag

upper sequence: AT2G14120.3 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA07G30150.1 (Glycine max), 5'ss of exon 10
---GTTGATCCATGTGAAGACTTAACAGCTGATGATATTCGGACTGCAATACAAAATGCAACTGGTCCCAGATCTGCATTATTTGTTCCAGATgtaggtttatctatatccctaagcatgtgggagcatttttttgcttatctgttctttccacatacttattttgcttgagttttttacttttacagcaactctgattagtatctcttgctttcattctcatctgcatag
   || |||||||||||||| || || | |||||||||||| || || ||||| ||||| ||||| || | ||| ||| | ||||||||||| |||||| ||       | || |           |   |  |   || |  |||    |||||| |||||  | |   | | | | | || |   || |     |  | ||  | |  || | ||| |||| |   |||
GAGGTGGATCCATGTGAAGATTTGACTGATGATGATATTCGCACAGCCATACAGAATGCCACTGGACCTAAATCAGCACTGTTTGTTCCAGAAgtaggtctaatcgc-cctcttattgcacacacacccctgatattttcttagttgaaaccacattcttatcctacc-aaatatgtaaattatttggccaactgaaaaaatacttat--ctattattttcatgttattag

upper sequence: AT2G14120.3 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 11
---GTTGATCCATGTGAAGACTTAACAGCTGATGATATTCGGACTGCAATACAAAATGCAACTGGTCCCAGATCTGCATTATTTGTTCCAGATgtaggttta-------------tctatatccctaagcatgtgggagcatttttttgcttatctgttctttccacatactt--------attttgcttgagttttttactttt----acagcaactctgattagtatctcttgctttcattctcatctgcatag
   || ||||||||||| || || || | |||||| ||||| |||||||| || |||||||| || || ||||||||||||||||| ||||| ||| || |              | | | | ||||||      |    | ||||    |||| | |    | || ||  ||        |||| || || | ||||   ||||    |   | |   | |    ||  |  ||||  |      || |    ||
GAGGTGGATCCATGTGAGGATTTGACTGATGATGACATTCGAACTGCAATTCAGAATGCAACCGGCCCTAGATCTGCATTATTTGTGCCAGAAgtatgtcttatagggctcttgttttttcttcctaagttctctgagtaaattttgaatttatttctaaacttcaaattgttttgccattatttagcatgcgattttccttttttgtaatctctatcttaacatataattagtgctaaccccaaaatatcttcag