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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTTTGGGAAGCCGAGCAGCAAAAGCCATTGGGTTCATAGACACCATGATTGAGTATTCCTACAATAATGGGCCTATTCAGAAAACACTGACCGCAGgttcatttccttcaaaccatcacctctcttgtgcttgttttttcttggaatcttacgctttataaatggcgatgatgtag

Basic information

species Arabidopsis thaliana
transcript AT2G05990.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G05990.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA08G45990.1 (Glycine max), 5'ss of exon 12
GTCCTTTGGGAAGCCGAGCAGCAAAAGCCATTGGGTTCATAGACACCATGATTGAGTATTCCTACAATAATGGGCCTATTCAGAAAACACTGACCGCAGgttcatttccttcaaaccatcacctctcttgtgcttgttttttcttggaatcttacgctttataaatggcgatgatgtag--------------
|||| ||||||||||| ||||||||||| ||||| ||||| ||||  |||||||| ||||| |  |  ||||  ||  | ||||||  |||    || |||  || |  |||     ||     || |      ||   |||||    | |||    |||  || |    |   | | |              
GTCCATTGGGAAGCCGTGCAGCAAAAGCAATTGGCTTCATTGACATGATGATTGACTATTCGTTTACCAATGCACCACTGCAGAAAGAACTACATGCTGgtaaatgtttttcttgagattcttcctttctgaaatgacctttctcc--acctttttgtttgcaactacttacactttggagttgttacaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125267705|gb|EL281790.1|EL281790
EST:     ATAATGGGCCTATTCAGAAAACACTGACCGCAG                         ATGAAGTTGGGAATGCAGCAGCCTTCTTGGCATCTCCATTGGCCTCTGCCA
genomic: ATAATGGGCCTATTCAGAAAACACTGACCGCAGgttcatttcc ... gatgatgtagATGAAGTTGGGAATGCAGCAGCCTTCTTGGCATCTCCATTGGCCTCTGCCA
EST: gi|125308534|gb|EL322619.1|EL322619
EST:     AGAAAACACTGACCGCAG                         ATGAAGTTGGGAATGCAGCAGCCTTCTTGGCATCTCCATTGGCCTCTGCCA
genomic: AGAAAACACTGACCGCAGgttcatttcc ... gatgatgtagATGAAGTTGGGAATGCAGCAGCCTTCTTGGCATCTCCATTGGCCTCTGCCA