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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGCTATGACTGGAGCAAAGGTGCAGAAAATCACAACCCGGCGACTGCAAAAAGCAGCATTTTCTTGCACCTGCCACAGgtgtgtgcgcgtcacagacaatagtaatatcatcatgtttcctaaacattagtgtctgtatctaacggacggaatttgttttaaatgaaattgcag

Basic information

species Arabidopsis thaliana
transcript AT1G80670.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G80670.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA02G13780.1 (Glycine max), 5'ss of exon 10
GCTTGCTATGACTGGAGCAAAGGTGCAGAAAATCACAACCCGGCGACTGCAAAAAGCAGCATTTTCTTGCACCTGCCACAGgtgtgtgcgcgt-----cacagacaa----tagtaatatcatcatgtttcctaaacattagtgtctgtatctaacggacggaatttgttttaaatgaaattgcag
| ||| ||||| |||||||||||||||||||||||||| || || || ||||| | |  ||| |  |||||| | ||||||||  |   | ||      |||  ||      ||||| |  |  |   |||| |   |      |    | || |  ||  ||||  |   |||   | ||     
GTTTGTTATGATTGGAGCAAAGGTGCAGAAAATCACAATCCAGCTACAGCAAAGAACTACATATATTTGCACTTACCACAGgtacgcttgtgtagatgtacatgcatgtttcagtaagactagtaatcttcccatggacacaatttgacaactcattgaacgaatgaggcctaacaaacat-----

upper sequence: AT1G80670.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA01G09290.1 (Glycine max), 5'ss of exon 10
GCTTGCTATGACTGGAGCAAAGGTGCAGAAAATCACAACCCGGCGACTGCAAAAAGCAGCATTTTCTTGCACCTGCCACAGgtg------tgtgcgcgtcacagacaat--agtaatatcatcatgtttcctaaacattagtgtctgtatctaacggacggaatttgttttaaatgaaattgcag
| ||| ||||| |||||||||||||||||||||||||| || || || ||||| | |  ||| |  |||||| | ||||||||       |||   || ||   |   |  ||||| |  |  |   || | |      | ||    ||| ||||       |||   |     |||| |  |  
GTTTGTTATGATTGGAGCAAAGGTGCAGAAAATCACAATCCAGCTACAGCAAAGAACTACATATATTTGCACTTACCACAGgtatgcttctgtatacgacatgcatgtttaagtaagactagtaacctttccagttccca-tgaacatatttaacaactc--attgaatgcggctgaactaacg-