1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATGGGTTTAATGGTTAGCCCACCAAAGCCTGGAGACATTTCATATGACCAATTCGTTCGTGAGAGgtatatatagtcattctactctaaataaacacgctttgatgaatgaaggatcacgatcatcgaacttcactggaacattattaacag
species | Arabidopsis thaliana |
transcript | AT1G70580.4 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ACCAAAGCCTGGAGACATTTCATATGACCAATTCGTTCGTGAGAG CAAGGGAATACTAGAATCACTGAGAAGAAGAGCAAGGATGATGAEST: gi|124784363|gb|EH874109.1|EH874109
genomic: ACCAAAGCCTGGAGACATTTCATATGACCAATTCGTTCGTGAGAGgtatatatag ... ttattaacagCAAGGGAATACTAGAATCACTGAGAAGAAGAGCAAGGATGATGA
EST: TGACCAATTCGTTCGTGAGAG CAAGGGAATACTAGAATCACTGAGAAGAAGAGCAAGGATGATGACTAGATGEST: gi|125189346|gb|EL204300.1|EL204300
genomic: TGACCAATTCGTTCGTGAGAGgtatatatag ... ttattaacagCAAGGGAATACTAGAATCACTGAGAAGAAGAGCAAGGATGATGACT-GATG
EST: TATGACCAATTCGTTCGTGAGAG CAAGGGAATACTAGAATCACTGAGAAGAAGAGCAAGGATGATGACTGATGGEST: gi|124709454|gb|EH800856.1|EH800856
genomic: TATGACCAATTCGTTCGTGAGAGgtatatatag ... ttattaacagCAAGGGAATACTAGAATCACTGAGAAGAAGAGCAAGGATGATGACTGATGG
EST: AGCCCACCAAAGCCTGGAGACATTTCATATGACCAATTCGTTCGTGAGAG CAAGGGAATACTAGAATCACTGAGAAGAAGAG
genomic: AGCCCACCAAAGCCTGGAGACATTTCATATGACCAATTCGTTCGTGAGAGgtatatatag ... ttattaacagCAAGGGAATACTAGAATCACTGAGAAGAAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGGTTTAATGGTTAGCCCACCAAAGCCTGGAGACATTTCATATGACCAATTCGTTCGTGAGAGgtatatatagtcattctactctaaataaacacgctttgatgaatgaaggatcacgatcatcgaacttcactggaacattattaacag
- - - - - - - - - - - - - - TGGAGA