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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTGAAGATTCCGCGGATGTTCGATCCGTGGGGAGGCTACAGCATTATTGGATTTGGTGATATTCTTTTGCCCGGTTTGCTAATCGCATTTGCTCTCAGgttcaacatccatacttctctctctctctcttaaatcatcatatatagtttcctttcatcaagtagtatagctttcccggcatttgttcttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G63690.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G63690.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GRMZM2G096343_T01 (Zea mays), 5'ss of exon 11
TACTGAAGATTCCGCGGATGTTCGATCCGTGGGGAGGCTACAGCATTATTGGATTTGGTGATATTCTTTTGCCCGGTTTGCTAATCGCATTTGCTCTCAGgt----tcaacatcc--------------atacttctctctctctctctt-aaatcatc-atatatagtttcctttcatcaag--tagtatagctt---tcccggcatttgttcttgcag
|  | |||||||| |||||||| ||||| ||||| || |||||||| || || ||||||||||| ||| | || ||  || |  | || |||||  | ||||    | ||  ||               |||  | |      || |||| | ||  || ||| ||| || ||| |||  |    |   ||  |||   ||||  |     |   |  ||
TGTTAAAGATTCCTCGGATGTTTGATCCATGGGGTGGATACAGCATCATAGGCTTTGGTGATATCCTTCTTCCTGGGCTGTTGGTTGCTTTTGCATTAAGgtgatgttaatttcagaagtagaggctggataactgtaatcaactttcttcacattttctataaatacttacctatcactagttttgaaatgccttttatccccccccccctctctctag

upper sequence: AT1G63690.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GRMZM2G165351_T03 (Zea mays), 5'ss of exon 9
TACTGAAGATTCCGCGGATGTTCGATCCGTGGGGAGGCTACAGCATTATTGGATTTGGTGATATTCTTTTGCCCGGTTTGCTAATCGCATTTGCTCTCAGgttcaac--atccatacttctctctctctctcttaaatcatcatatat-agtttcctttcatcaagtagtatagctttcccggcatttgttcttgcag
| || || || ||||| ||||| ||||| ||||| || |||||||| ||||| ||||||||||| ||| | || ||| |  || | || ||  | || ||||    |    |   | |  ||    | | | ||   |   |||  |  | ||   || | |  | |  | | ||||| | |                
TGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctaggctgcaatcttcgtggttttttttttttttgcatgaacgaattcgattccgttgaattattt-gcttttcag----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164158368|gb|ES048325.1|ES048325
EST:     GGATTTGGTGATATTCTTTTGCCCGGTTTGCTAATCGCATTTGCTCTCAG                         ATATGACTGGCTAGCTAAC
genomic: GGATTTGGTGATATTCTTTTGCCCGGTTTGCTAATCGCATTTGCTCTCAGgttcaacatc ... gttcttgcagATATGACTGGCTAGCTAAC