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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTTATGGCAGTATTTGCCTACATATATCTTCAATCATTTATTGTCTCCCAAAGCGTTTCGGTTGACAAAATCCTAGACCAGgtaaatgaacttctcgactttgtatcaaaactgaaaaatattcacttttgcactgaatcattgaatcaaacatgtgatggtttcattgtag

Basic information

species Arabidopsis thaliana
transcript AT1G62430.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G62430.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: LOC_Os01g55360.1 (Oryza sativa), 5'ss of exon 11
ATGGTTATGGCAGTATTTGCCTACATATATCTTCAATCATTTATTGTCTCCCAAAGCGTTTCGGTTGACAAAATCCTAGACCAGgtaaatgaacttctcgactttgtatcaaaactgaaaaatattcacttttgcactgaatcattgaatcaaacatgtgatggtttcat-tgtag
|||||||||||||| ||||| ||||||||||  |||||||| ||     |||||| |   || |||||   |||| | || ||||| |           |||  ||  |||    |  |   | || ||| |||   ||  | |||       |  |  |||  |||    |  ||
ATGGTTATGGCAGTTTTTGCATACATATATCACCAATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAGgtcag----------gaccatgcttca---tttgagcctgtttactattgtcttgtgtgattcttatgcatttccgatcttttgtcatccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124918275|gb|EH992127.1|EH992127
EST:     TTTATTGTCTCCCAAAGCGTTTCGGTTGACAAAATCCTAGACCAG                         ATATTGACGAACCTTACCTTTGAGGAACAACAAGCGCTCTTCGTGAAGTTA
genomic: TTTATTGTCTCCCAAAGCGTTTCGGTTGACAAAATCCTAGACCAGgtaaatgaac ... ttcattgtagATATTGACGAACCTTACCTTTGAGGAACAACAAGCGCTCTTCGTGAAGTTA
EST: gi|124712299|gb|EH803701.1|EH803701
EST:     ATCATTTATTGTCTCCCAAAGCGTTTCGGTTGACAAAATCCTAAGACCAG                         ATATTGACGAACCTTACCTTTGAGG
genomic: ATCATTTATTGTCTCCCAAAGCGTTTCGGTTGACAAAATCCTA-GACCAGgtaaatgaac ... ttcattgtagATATTGACGAACCTTACCTTTGAGG