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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTCTACTTCATTGGGTTTGCATTTTTCTGCCTCGAATCAGTGGTTAGCATCTGGGTTATTCAGgtctgtctcttcaactcccatcactatattatcagtctttgaacatagtgttataatctgtactcatttcttttggtatgggtttgttttgttggagcag

Basic information

species Arabidopsis thaliana
transcript AT1G61250.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G61250.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: LOC_Os07g37740.1 (Oryza sativa), 5'ss of exon 12
ATATTCTACTTCATTGGGTTTGCATTTTTCTGCCTCGAATCAGTGGTTAGCATCTGGGTTATTCAGgtctgtctcttcaa---------ctcccatcact--atattatcagtctttgaacatagtgttataatctgtactcatttcttttggtatgggtttgttttgttggagcag---------------------------------------------------------------------------------------
|| ||||||||  |||| |||| ||| |||||| |||||||| || | |||||||||||||| |||||| |||     ||         |||||  |  |  ||||||| || ||||  |   | ||     ||   ||   || |   |   | | |   | | |   | ||                                                                                           
ATCTTCTACTTTGTTGGATTTGGATTGTTCTGCGTCGAATCATTGCTCAGCATCTGGGTTATCCAGgtcagtcctgcgaataacaaatactccctccgtttcatattataagactttcta-gcattgcccatattcatatagatgttaataaatctagacatatgtgtctagaaagtcttataatataaaacggagaaagtatgtttttatgaaataaattctcaagtagtctatctgagccgttttgacatttgtgaatgcag