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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAGCTTCAACACCATGCCCAGCATCGGTTACCAACATTTCAGTTGATCTTTGTACACGTGATCGAATCGCTTGTCTTTGTACCGgtatgcatacataaccctggttcttttttattccaagatttcagaggattctcttaagcgacatgatataactatttgaaattgcag

Basic information

species Arabidopsis thaliana
transcript AT1G60995.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G60995.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA15G05080.1 (Glycine max), 5'ss of exon 10
TGCAGCTTCAACACCATGCCCAGCATCGGTTACCAACATTTCAGTTGATCTTTGTACACGTGATCGAATCGCTTGTCTTTGTACCGgtatgcatacataaccctggttcttttttattccaagatttcaga--ggattctct----taagcgacatgatataactatttgaaattgcag-------------------------
||||||||||||||||||| | ||||||  | |||||||||||| ||||||||||||| ||||| ||||| || || ||||| || ||| |||  |||     |   | |  |||  || ||  ||||       ||| |||    |  | |  ||    ||     ||    |||| |                         
TGCAGCTTCAACACCATGCACGGCATCGCCTTCCAACATTTCAGCTGATCTTTGTACATGTGATTGAATCACTAGTTTTTGTTCCTgtaagcactcattttaatttatttacttttgtcaaaagtttctatttaaattgtctcgtatttgtgctatttcttattctattagctttgctgatgaattgcttattgatttctgcag

upper sequence: AT1G60995.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA08G19970.1 (Glycine max), 5'ss of exon 10
TGCAGCTTCAACACCATGCCCAGCATCGGTTACCAACATTTCAGTTGATCTTTGTACACGTGATCGAATCGCTTGTCTTTGTACCGgtatgcatacataaccctggttcttttttattccaagatttcaga--ggattctcttaagc----gacatgatataactatttgaaattgcag-------------------------
||||||||||||| ||||| | ||||||  | |||||||||||| ||||||||||||| ||||| ||||| || || ||||| || ||| |||  |||     | | | |  |||  || ||  ||||       ||| |||   |     |  ||    ||  |  ||    |||| |                         
TGCAGCTTCAACATCATGCACGGCATCGCCTGCCAACATTTCAGCTGATCTTTGTACATGTGATTGAATCACTAGTTTTTGTTCCTgtaagcactcattttaattgatttacttttgtcaaaagtttctatttaaattgtctcgtgtttgtgctatttcttattttattagctttgctgataaattgtttattgatttctgcag

upper sequence: AT1G60995.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv12s0034g02140.t01 (Vitis vinifera), 5'ss of exon 10
TGCAGCTTCAACACCATGCCCAGCATCGGTTACCAACATTTCAGTTGATCTTTGTACACGTGATCGAATCGCTTGTCTTTGTACCGgtatgcatacata--accctggttcttttttattccaagatttcagaggattctcttaagcgacatgatataactatttgaa-attgcag------------
|||||||||||||||||||    |||||| | |||||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||| ||||||||   |   || |  |   || ||    || |  | |  |||||  | | |||  || |  |  |   |  | ||||               
TGCAGCTTCAACACCATGCTAGACATCGGCTTCCAACATTCCAGTTGATCTTTGTACACGTGATTGAATCCCTTGTCTTTGTACCAgtaagcatacatcttattttgttaatccattgttggtggagtgtacat-attctacttaacga-gtgttggagtttgatatatattgtgagctaaatcctaa