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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACTTAGAGAGGAGGAAGGTAAAAAGCTTGGTCTTCAAACTAGTGCTAAGAGTGGCTCAAAGGACAGTGATGTGAAAATGACTGATGCAGAGgtacaatatctattggacttagagatcttatatcaagtccaatcttctaagaatattttttgctctgcatttgtttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G51710.2
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116485386|gb|EG527978.1|EG527978
EST:     GTGCTAAGAGTGGCTCAAAGGACAGTGATGTGAAAATGACTGATGCAGAG                         GCGTCTGCAAATGGAAGTGGAGAATCATCCACAGTAAACCCACAGGAAG
genomic: GTGCTAAGAGTGGCTCAAAGGACAGTGATGTGAAAATGACTGATGCAGAGgtacaatatc ... ttgtttgcagGCGTCTGCAAATGGAAGTGGAGAATCATCCACAGTAAACCCACAGGAAG
EST: gi|86084161|gb|DR379920.1|DR379920
EST:     GTGCTAAGAGTGGCTCAAAGGACAGTGATGTGAAAATGACTGATGCAGAG                         GCGTCTGCAAATGGAAGTGGAGAATCATCCACAGTAAACCCACAGGAAG
genomic: GTGCTAAGAGTGGCTCAAAGGACAGTGATGTGAAAATGACTGATGCAGAGgtacaatatc ... ttgtttgcagGCGTCTGCAAATGGAAGTGGAGAATCATCCACAGTAAACCCACAGGAAG
EST: gi|125269879|gb|EL283964.1|EL283964
EST:     CAAAGGACAGTGATGTGAAAATGACTGATGCAGAG                         GCGTCTGCAAATGGAAGTGGAGAATCGTCCACAGTAAACCCACAGGAAG
genomic: CAAAGGACAGTGATGTGAAAATGACTGATGCAGAGgtacaatatc ... ttgtttgcagGCGTCTGCAAATGGAAGTGGAGAATCATCCACAGTAAACCCACAGGAAG