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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCTTCTAAGCATGTTCTTCCTGTTCCAAGACCAGATCCAGAAGTTGTTGCCATGCTTACCTCGGGATTAACTGCATTAATCGCCCTTGAAAAGgtcgtgctaacgagtgtcattaactgtctgttttcatcgtttttcatttcagactctcaaattcctcatttttgtatgtattaatagctgtatgatattcttaagttgctagttcaattatctctgacattttctttatcttatgggaattcacag

Basic information

species Arabidopsis thaliana
transcript AT1G49670.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G49670.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: LOC_Os09g28570.3 (Oryza sativa), 5'ss of exon 11
GTATCTTCTAAGCATGTTCTTCCTGTTCCAAGACCAGATCCAGAAGTTGTTGCCATGCTTACCTCGGGATTAACTGCATTAATCGCCCTTGAAAAGgtcgtgctaacgagtgtcattaactgtctgttttcatcgtttttcatttcagactctcaaattcctcatttttgtatgtattaatagctgtatg-atattcttaagttgctagttcaattatctctgacattttctttatcttatgggaattcacag
||  |  | |||||| ||||||| || ||||||||||||||||| || ||||| ||||| || || ||||| ||||| | ||| |||||||| |||||  |  ||   |||    ||   | | || |  |||    | |   ||    |||  |  |     |     || |   ||    |  || |  ||     ||| ||  |  |   |||  |  |||  | | ||   | |               
GTTCCAGCCAAGCATCTTCTTCCGGTGCCAAGACCAGATCCAGAGGTCGTTGCTATGCTAACATCAGGATTGACTGCTTCAATTGCCCTTGAGAAGgt--tagtatacagttcttttgtttctttgcta-cataacatgtggctttgacctcatacttggtgaaccaacgtttaagtttggtgtggtctacatgaatataacttcattatctgatttgcgttgatttctgctgcctttag-------------

upper sequence: AT1G49670.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GRMZM2G368058_T01 (Zea mays), 5'ss of exon 6
GTATCTTCTAAGCATGTTCTTCCTGTTCCAAGACCAGATCCAGAAGTTGTTGCCATGCTTACCTCGGGATTAACTGCATTAATCGCCCTTGAAAAGgtcgtgctaacgagtgtcattaactgtctgttttcatcgtttttcatttcagactctcaaattcctcatttttgtatgtattaatagctgtatgatattcttaagttgctagttcaattatctctgacattttctttatcttatgggaattcacag------------
 | ||  | ||   | || |||| || ||||||||||| ||||| || ||||| ||||| || || ||||| |||||||  ||||| |||||||||||  || |      | |   | | | |   ||| ||  ||||  |||     |  |      |  | || | | | ||| || | |   |  | | ||||  |  |||    |  |||| |||       ||   |    |      |     ||             
ATTTCAGCCAAAAGTCTTATTCCAGTGCCAAGACCAGACCCAGAGGTGGTTGCTATGCTAACATCAGGATTGACTGCATCCATCGCTCTTGAAAAGgttctgttcctccatatttcttagttt---tttccacggtttggcat-----atgccatgtatttttatctctat-tgtgttcacataagattcaaattccaagtttgaagatataattttcttccttgcttatctggattcgatttatgctgcatttcttccattag

upper sequence: AT1G49670.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA02G15070.1 (Glycine max), 5'ss of exon 11
GTATCTTCTAAGCATGTTCTTCCTGTTCCAAGACCAGATCCAGAAGTTGTTGCCATGCTTACCTCGGGATTAACTGCATTAATCGCCCTTGAAAAGgtcgtgctaacgagtgtcattaactgtctgttttcatcgt-ttttcatttcagactctcaaat-tcctcatttttg-------tatgtattaa----tagctgtatgatattct-taagttgctagttcaattatctctgacattttctttatcttatgggaattcacag-
 |  |||| || |||| |||||| || || ||||||||||| |||||||||||||||||||| |||||||| ||||| | ||| || || |||||||| |  ||||    |    ||  ||   || ||     || |  | |||||  | | |  | | | ||||| ||||       | |  || ||    |   | ||| || |||| | | |       |   || |||    ||   | |   | || ||   | ||| |  
ATTCCTTCAAAACATGCTCTTCCGGTGCCTAGACCAGATCCTGAAGTTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAGgttg-actaata--taatgttgtctccttgcttcagatgtatccttatttcttagtatttattatactcatctttgatatcaatgtaaatcaagccttttttttattatcttctgtgaatcttccactggcttgtcttgatcaaagtttccttttt-tgtacactcaaaag

upper sequence: AT1G49670.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv03s0063g00610.t01 (Vitis vinifera), 5'ss of exon 11
GTATCTTCTAAGCATGTTCTTCCTGTTCCAAGACCAGATCCAGAAGTTGTTGCCATGCTTACCTCGGGATTAACTGCATTAATCGCCCTTGAAAAGgt-cgtgctaacgagtgtcattaactgtctgttttcatcgtttttcatttcagactctcaaattcctcatttttgtatgta---ttaatagctgtatgatattcttaagttgctagttcaattatctctgacattttctttatcttatggga--attcacag----------------------------------
||  |||| |||||  | ||||| ||  ||||||||||||||||||||||||| ||||| ||||| ||| | || |||| ||| ||  | ||||||||  ||     | ||||||  |  ||   |||        || || ||| ||   | |  |  |     ||| | ||| ||   | ||    |  || |  ||  |    | ||  | |  |  ||| |    || || |    |  || ||   || |  |                                  
GTTCCTTCCAAGCACATCCTTCCCGTGGCAAGACCAGATCCAGAAGTTGTTGCGATGCTAACCTCAGGACTTACAGCATCAATTGCTTTAGAAAAGgtatgttacttcaagtgtctgtc-ctccttgtccaagattttgttaattgcaatatatgtatgtaaatgtttatatatttacattcaactaattcattaattttctggccttctgatgctgtattctttctttttgtcatccattactgagacagttaattgtcttgttctgacaattcttttatggaacttgtag