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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTAAAAGCTACTTTTGTAAGGAGAGCTTCAGAGTTCTTGAGAGACTACTTTGCTAGTCTGGTAGATTTCAAGTTCAGTGACAAAAGCTACTTTTCTCAGgtactacttttataaaattccatcgtaccaatatgaagtctagtgactaattctgaatatttatcaccgcatcttttaaacag

Basic information

species Arabidopsis thaliana
transcript AT1G47560.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G47560.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: LOC_Os03g42750.1 (Oryza sativa), 5'ss of exon 11
ATTAAAAGCTACTTTTGTAAGGAGAGCTTCAGAGTTCTTGAGAGACTACTTTGCTAGTCTGGTAGATTTCAAGTTCAGTGACAAAAGCTACTTTTCTCAGgtactacttttataaaattccatcgtaccaa--tatgaagtctagtgactaattctgaatatttatcaccg---catcttttaaacag------
| | ||  | ||||||||  |  | || ||||| || |||||  |||||||  ||||  |||| || |||| | | ||||||||||||||||||||||||||  |  |   | |    | | ||| | |||  ||| |  |    |   |  ||    | ||   |||  |     ||||||||          
ACTGAAGACAACTTTTGTTCGACGCGCATCAGAATTTTTGAGGAACTACTTCTCTAGCTTGGTGGACTTCATGATAAGTGACAAAAGCTACTTTTCTCAGgt-ttcttcacagacccattcttcgcagcaatttattaccttctatttttgttttctgagatgactcagagagttctcttttaactgaaagtag

upper sequence: AT1G47560.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GRMZM2G099056_T01 (Zea mays), 5'ss of exon 11
ATTAAAAGCTACTTTTGTAAGGAGAGCTTCAGAGTTCTTGAGAGACTACTTTGCTAGTCTGGTAGATTTCAAGTTCAGTGACAAAAGCTACTTTTCTCAGgtactacttttataaaattccatcgtaccaatatgaagtctagtgactaattctgaatatttatcaccgcatcttttaaacag-------
| | ||| | ||||||||  |  |||| |||||||| ||| |  |||||||  | ||| ||||||| |||| | |||||||||||||||||||||| |||||     || |  | |  | |||  |   ||    |  | |  |  |  |||    ||      ||  |     ||| ||| |       
ACTGAAAACAACTTTTGTTCGACGAGCATCAGAGTTTTTGCGGAACTACTTCTCCAGTTTGGTAGACTTCATGATCAGTGACAAAAGCTACTTTTCACAGgt-----ttcttcatagcttcatttttgaaagtaaatatttcctttcccatttgagatgaccgacagagttcacttttaactgaaagcag