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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTAAAAGCTACTTTTGTAAGGAGAGCTTCGGAGTTCTTGAGAAACTACTTTGCTAGTTTGGTAGATTTCATGGTCAGCGACAAAAGCTACTTTTCTCAGgtactaattttataaaattctattccaatatgaagtctagtgattataattctgaatatttatcaccgcatcttttaaacag

Basic information

species Arabidopsis thaliana
transcript AT1G47550.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G47550.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: LOC_Os03g42750.1 (Oryza sativa), 5'ss of exon 11
ATTAAAAGCTACTTTTGTAAGGAGAGCTTCGGAGTTCTTGAGAAACTACTTTGCTAGTTTGGTAGATTTCATGGTCAGCGACAAAAGCTACTTTTCTCAGgtactaattttataaaattctattc--caatatgaagtctagtgattataattctgaatatttatcaccg---catcttttaaacag------
| | ||  | ||||||||  |  | || || || || ||||| ||||||||  |||| ||||| || |||||| | || |||||||||||||||||||||||              |||||   |  |||| |     ||  |  || |  ||    | ||   |||  |     ||||||||          
ACTGAAGACAACTTTTGTTCGACGCGCATCAGAATTTTTGAGGAACTACTTCTCTAGCTTGGTGGACTTCATGATAAGTGACAAAAGCTACTTTTCTCAGgtttcttcacagacccattcttcgcagcaatttattaccttctatttttgttttctgagatgactcagagagttctcttttaactgaaagtag

upper sequence: AT1G47550.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GRMZM2G099056_T01 (Zea mays), 5'ss of exon 11
ATTAAAAGCTACTTTTGTAAGGAGAGCTTCGGAGTTCTTGAGAAACTACTTTGCTAGTTTGGTAGATTTCATGGTCAGCGACAAAAGCTACTTTTCTCAGgtactaattttataaaattctattccaatatgaagtctagtgattataattctgaatatttatcaccgcatcttttaaacag-------
| | ||| | ||||||||  |  |||| || ||||| ||| | ||||||||  | ||||||||||| |||||| |||| ||||||||||||||||| |||||      || |||   |  | ||  ||  | || | |     ||   |||    ||      ||  |     ||| ||| |       
ACTGAAAACAACTTTTGTTCGACGAGCATCAGAGTTTTTGCGGAACTACTTCTCCAGTTTGGTAGACTTCATGATCAGTGACAAAAGCTACTTTTCACAGgtttc---ttcatagcttcatttttgaaagtaaa-tatttcctttcccatttgagatgaccgacagagttcacttttaactgaaagcag

upper sequence: AT1G47550.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv18s0001g11700.t01 (Vitis vinifera), 5'ss of exon 11
ATTAAAAGCTACTTTTGTAAGGAGAGCTTCGGAGTTCTTGAGAAACTACTTTGCTAGTTTGGTAGATTTCATGGTCAGCGACAAAAGCTACTTTTCTCAGgta-----ctaattttataaaattctattcc-aata-------tgaagtctagtgattataattctgaatatttatc-accgcatcttttaaacag
| ||||| |||| ||||| |||||||| || || ||||| ||||||||||| || |||||||| ||||| ||| | || || || || ||||| |||||||||     |||  || ||    || |||||   |||       |||  | | | | |   |||||| | | ||  |  | | | | | ||||||||
ACTAAAAACTACATTTGTTAGGAGAGCATCTGAATTCTTAAGAAACTACTTCGCCAGTTTGGTGGATTTTATGATAAGTGATAAGAGTTACTTCTCTCAGgtattcccctatcttcatgttgttttattcttgataattatcttgacatttggggctaggaattctaatttttgctggatcacttgtattaaacag