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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGATTCATCGAAATCATTTGCACAAAATGTCGAGTTGACAGATCCGATCCTTTCTCGTTTTGATATCTTGTGTGTTGTCAAGgtattttttcaaacctctgctcttgttcttgcatatcattgattgtattaattttttggctattgaccaattatatggctgcag

Basic information

species Arabidopsis thaliana
transcript AT1G44900.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G44900.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA17G03920.1 (Glycine max), 5'ss of exon 12
GTATGATTCATCGAAATCATTTGCACAAAATGTCGAGTTGACAGATCCGATCCTTTCTCGTTTTGATATCTTGTGTGTTGTCAAGgtattttttcaaacctctgctcttgttcttgcatatcattgattgtattaattttttg-gctattgaccaattatatggctgcag
 |||||||| || ||| ||||  | |||||||| || ||||||||||| ||  ||||||||||||||||| | |||||||| |||||  | |||  |  |  ||||  | |  || | | |  |   ||| ||  |||| ||| |  | |     ||| ||  |      
ATATGATTCCTCAAAAACATTCTCTCAAAATGTTGAATTGACAGATCCAATTATTTCTCGTTTTGATATCCTCTGTGTTGTGAAGgttatatttatattcattgcttctttgtttacctct--tcatttgaatatatttattgagggagttctttattttacag------

upper sequence: AT1G44900.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv01s0150g00390.t01 (Vitis vinifera), 5'ss of exon 12
GTATGATTCATCGAAATCATTTGCACAAAATGTCGAGTTGACAGATCCGATCCTTTCTCGTTTTGATATCTTGTGTGTTGTCAAGgt-attttttcaaacctctgctcttgttcttgcatatcattgattgtattaattttttggctattgaccaattatatggctgcag
 |||||||| |||||  ||||| |||||||||| || ||||||||||| ||| ||||||| |||||| || | |||||||||||||| ||||||  |   ||||  |||| | |||  | ||   |   ||| |||   |||  ||    |   || |   |   |||||
ATATGATTCCTCGAAGACATTTTCACAAAATGTTGAATTGACAGATCCAATCGTTTCTCGGTTTGATGTCCTCTGTGTTGTCAAGgttatttttctactactcttatcttttcctt-tacatttcta--tgtgtta--ctttaagcacgggggaaacttgtttaatgcag