Sequence
atgc intronic sequence ATGC exonic sequenceCTCACTGTTCCTCAAATAAAAGCTGAAATGGAAAAAACATTGCAGTGGCTTGTTCCTGTTGCTACAAACACCACCAAgtaagcttctgtgatgttttctatctctttatctttggttttgtgtcatcattagaactctgttctcacttaaatcatgtatttttttttggcggatcaa...
Basic information
species | Arabidopsis thaliana |
transcript | AT1G34320.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G34320.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GRMZM2G046846_T01 (Zea mays), 5'ss of exon 11
CTCACTGTTCCTCAAATAAAAGCTGAAATGGAAAAAACATTGCAGTGGCTTGTTCCTGTTGCTACAAACACCACCAAgtaagcttctgtgatgttttctatctctttatctttggttttgtgtcatcattagaactctgttctcacttaaatcatgtatttttttttggcggatcaa------
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CTTACTGTTTCTCAAATCAAGGCTGAAATGGAGAAGACCCTGCGGTGGCTTGTCCCTATTGCAAGTAACACCACCAAgtaa---ttcaaaatcttaactaccttcataacatgcaaaata-gccagagcttccact-tatccctttttg--ttactgatttttttatgatctgtccataccag
upper sequence: AT1G34320.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA20G31400.1 (Glycine max), 5'ss of exon 13
CTCACTGTTCCTCAAATAAAAGCTGAAATGGAAAAAACATTGCAGTGGCTTGTTCCTGTTGCTACAAACACCACCAAgtaagctt-ctgtgatgttttctatctctttatctttggttttgtgtcatcattagaactctgttctcacttaaatcatgtatttttttttggcggatcaa
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CTTACCGTCCCACAAATCAAAGCTGAAATGGAGAAAATATTGCAGTGGCTTGTTCCTATTGCAGCCAACACAACGAAgtatatttgctaaccccctactcagaaattcctagatttcctagtgttgcatttggtacaacaattttgtttaaatt-tgcttttcattatggtcaataat
upper sequence: AT1G34320.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA10G36210.1 (Glycine max), 5'ss of exon 13
CTCACTGTTCCTCAAATAAAAGCTGAAATGGAAAAAACATTGCAGTGGCTTGTTCCTGTTGCTACAAACACCACCAAgtaagctt-ctgtgatgttttctatctctttatctttggttttgtgtcatcattagaactctgttctcacttaaatcatgtatttttttttggcggatcaa
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CTTACCGTGCCACAAATCAAAGCTGAAATGGAGAAAATATTGCAATGGCTTGTTCCTATTGCCGCCAATACAACAAAgtatatttgctaaccccttactcagcaattcctagatttcctagtattgcatttggtacaacaaatttgtttaaatt-tgcttttcattatggtcaataag
upper sequence: AT1G34320.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv18s0076g00260.t01 (Vitis vinifera), 5'ss of exon 10
CTCACTGTTCCTCAAATAAAAGCTGAAATGGAAAAAACATTGCAGTGGCTTGTTCCTGTTGCTACAAACACCACCAAgtaagcttctgtgatgttttctatctctttatctttggttttgtgtcatcat-tagaactctgttct-cacttaaatcatgtatttttttttggcggatcaa
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CTTACCATTCCACAAATCAAAGCTGAAATGGAGAAAACTTTGCATTGGCTTGTGCCTATTGCCGCCAACACAACCAAgtaaaactgc-caatcttcacaaacaactattttattgggatgtaactacatctggtaccccattttacagtttgcttgctttcccatttatggtttgtaa-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124753396|gb|EH843526.1|EH843526EST: ATGGAAAAAACATTGCAGTGGCTTGTTCCTGTTGCTACAAACACCACCAA AGCGCATCATGGTTTTGGATGGGTTGGAGAATGGGCAAGTTCCGG
genomic: ATGGAAAAAACATTGCAGTGGCTTGTTCCTGTTGCTACAAACACCACCAAgtaagcttct ... tctcaaccagAGCGCATCATGGTTTTGGATGGGTTGGAGAATGGGCAAGTTCCGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCACTGTTCCTCAAATAAAAGCTGAAATGGAAAAAACATTGCAGTGGCTTGTTCCTGTTGCTACAAACACCACCAAgtaagcttctgtgatgttttctatctctttatctttggttttgtgtcatcattagaactctgttctcacttaaatcatgtatttttttttggcggatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctatctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctcactt