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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATTTACTTATGCTTTTGAATGTTTCATCTGCTGAGGGTGTTTTGTTAACAACGTATGGCAAGTTGCAACCACCTCTTGGAAAACACAGATTAAAGgtactttatttttctcgtttgtgtgatttgttttctaactatgatgtatctttcactagatggtttatgatttgtaatttctgaactacatttgttcaatagacgaaaatttgaatttatttatttttcctag

Basic information

species Arabidopsis thaliana
transcript AT1G30470.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G30470.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv10s0003g04630.t01 (Vitis vinifera), 5'ss of exon 11
GTGATTTACTTATGCTTTTGAATGTTTCATCTGCTGAGGGTGTTTTGTTAACAACGTATGGCAAGTTGCAACCACCTCTTGGAAAACACAGATTAAAGgta---ctttatttttc---tcgtttgtgtgatttgttttctaac-tatgatgtatctttcactagatggtttatgatttgtaatttctgaactacatttgttcaata--gacgaaaatttgaatttatttatttttcctag-------------
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GTGATTTGCTCAAGCTTTTAGATGTTTCATCTGAGGAGAGTCTCTTGCTAACTACTTATGGAAAGTTGCAGCCACCTCTTGGAAAGCACCGTCTGAAGgtatccctttgtatttgcaattgtttaggtgctttgtcgtgcactatataggatgaatataaatgtttgtttttttcttctttttttttcaattatagattattattattgatgacaacttgatgctgattatctatcaatatgggaattttcag