Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTGGGGGTTTTATGTGAAGCTCAGTATTTCCAAAATGTGATGCGTGTTGGTTACCGGCTTAGGTCTGCACTGgtaagaaaaagtttcacatgaattatcttttgctacttagtttttctttttgctctgcttctcatgttttgatgcaatacctgtactgttatgtctgttgaaagctatagcagatgcttatagattgcttcattctgctgatgaattctcccttaatag

Basic information

species Arabidopsis thaliana
transcript AT1G30400.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G30400.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA13G29180.1 (Glycine max), 5'ss of exon 10
GTATTGGGGGTTTTATGTGAAGCTCAGTATTTCCAAAATGTGATGCGTGTTGGTTACCGGCTTAGGTCTGCACTGgtaagaaaaagtttcacatgaattatcttttgctacttagtttttctttttgctctgcttctcatgttttgatgcaatacctgtactgttatgtctgttgaaagctatagcagatgcttatagattgcttcattctgctgatgaattctcccttaatag
|| || ||||| |||||||||||||| ||||| || ||||| |||||||||||||||||| | || ||  || |||||||        ||       || | | ||   || ||  ||| |      || |  ||| |||    |||     |      |    ||  |    | |||| |  |||   |   |                                        
GTCTTTGGGGTGTTATGTGAAGCTCAATATTTTCAGAATGTCATGCGTGTTGGTTACCGGTTAAGATCAACATTGgtaag--------tc-------ttttttattttcacatatatttacccacacctttatttcccat----tgagtaggttgtcaaagaactacttgacctaaaagtttaagccattaaat----------------------------------------

upper sequence: AT1G30400.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA15G09900.1 (Glycine max), 5'ss of exon 10
GTATTGGGGGTTTTATGTGAAGCTCAGTATTTCCAAAATGTGATGCGTGTTGGTTACCGGCTTAGGTCTGCACTGgtaagaaaaagtttcacatgaattatcttttgctacttagtttttctttttgctctgcttctcatgttttgatgcaat-acctgtactgttatgtctgttgaaagctatagcagatgcttatagattgcttcattctgctgatgaattctcccttaatag
|| || ||||| |||||||||||||| ||||| || ||||| |||||||||||||||||| | || ||  || |||||||      |||    | |  ||| | ||   || |   ||| || |||  |  | |    | |   |  |  | |      ||||       ||  ||  |                                                        
GTCTTTGGGGTGTTATGTGAAGCTCAATATTTTCAGAATGTCATGCGTGTTGGTTACCGGTTAAGATCAACATTGgtaagtt----tttttttttacatatttattcacacctttatttcctgtttagtaggttgtcaaagagctacttgactcgatcatacttaaccaccttgtgtca--------------------------------------------------------

upper sequence: AT1G30400.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv10s0003g04390.t01 (Vitis vinifera), 5'ss of exon 10
GTATTGGGGGTTTTATGTGAAGCTCAGTATTTCCAAAATGTGATGCGTGTTGGTTACCGGCTTAGGTCTGCACTGgtaagaaaaagtttcacatgaattatcttttgctactta-----gtttttctt-tttgctctgcttctcatgttttgatgcaatacct-gtactgttatgtctgttgaaagctatagcagatgcttatagattgcttcattctgctgatgaattctcccttaatag
||||| ||||| |||| ||||||||||||||| || ||||| |||||||| |||| |||| |||| ||  |  |||||||   |  ||||   |  |   | ||    | ||||     || | |||| ||  |     || ||     |||    ||| | | |||     | |||                                                                
GTATTCGGGGTATTATTTGAAGCTCAGTATTTTCAGAATGTCATGCGTGTGGGTTTCCGGGTTAGATCAACTTTGgtaagttga--tttcttctctaccgttttgaagtgcttatataggtatatcttgttcacctcagttgtcccaagttgcattaatgctttgtataaacacgtc----------------------------------------------------------------