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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTAATTTGATATCTCTAGGTGTGGAGACTTCAAGCAGCACTTGGTGAACAAACAGAAATCACAAAATTCAGCCAGCAGGAATATGAAAGACTGCAAAATgtatattcatttattagccatgatgtttttgtaactttcttgtttcgattttactttttccctttgcttaatcctgtgtcaatgtgtcttctactccag

Basic information

species Arabidopsis thaliana
transcript AT1G18470.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G18470.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA05G07960.1 (Glycine max), 5'ss of exon 12
TCTAATTTGATATCTCTAGGTGTGGAGACTTCAAGCAGCACTTGGTGAACAAACAGAAATCACAAAATTCAGCCAGCAGGAATATGAAAGACTGCAAAATgtatattcatttattagccatga-tgtttttgtaactttcttgtttcgattttactttttcc---ctttgcttaatcctgtgtcaatgtgtcttctactccag
                   || |||||||| || ||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||| |  |    |      |||| |  |||||| | |    |  ||    | ||  ||||||    |||  |  ||  ||| | || | | | || ||     
-------------------GTTTGGAGACTCCAGGCAGCTCTTGGTGAACAAACAGAAATTACAAAATTCAGCCAACAGGAGTATGAAAGACTTCAAAATgtaaaacccccaaccttaaatgagtaattttgtgagtcatgttcttttgctgtatattttccaaagtttcttatatgatgtatgaaggagccgtccacaa---

upper sequence: AT1G18470.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA17G13040.1 (Glycine max), 5'ss of exon 12
TCTAATTTGATATCTCTAGGTGTGGAGACTTCAAGCAGCACTTGGTGAACAAACAGAAATCACAAAATTCAGCCAGCAGGAATATGAAAGACTGCAAAATgtatattcatttattagccatga-tgtttttgtaactttcttgtttcgattttactttttcc---ctttgcttaatcctgtgtcaatgtgtcttctactccag
                   || |||||||| || ||||| ||||| |||||||| ||||| ||||| |||||||| ||||| ||||||||||| |||||||||||     | |      |||| |  |||||| | |    |  ||    | ||  | ||||    |||     ||  ||| | ||   | | || ||     
-------------------GTTTGGAGACTCCAGGCAGCTCTTGGCGAACAAACTGAAATTACAAAGTTCAGCCAACAGGAGTATGAAAGACTTCAAAATgtataacacataaccttaaatgagtaattttgtgagtcatgtacttatgctgtatatcttccaaagtttctaatatgatgtatgaagaagccctccacaa---

upper sequence: AT1G18470.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv17s0000g04160.t01 (Vitis vinifera), 5'ss of exon 12
TCTAATTTGATATCTCTAGGTGTGGAGACTTCAAGCAGCACTTGGTGAACAAACAGAAATCACAAAATTCAGCCAGCAGGAATATGAAAGACTGCAAAATgtatattcatttattagccatgatgtttttgtaactttcttgtttcgattttactttttccctttgcttaatcc-tgtgtcaatgtgtcttctactccag
                   ||||||||||||||||| ||||||||||| ||| ||||||||||||| | |||  ||||||| ||||||||||| ||||||||| |||  |  |       ||||   ||  || | |   | | |    |  |  | |   ||| |     | | ||| |  |   |   |||   | | 
-------------------GTGTGGAGACTTCAAGCTGCACTTGGTGAGCAATCAGAAATCACAAAGTACAGTAAGCAGGAGTATGAAAGACTTCAAAATgtaaatttctcaaccttgactgatcgattcttatcatagatatgtgacgtgcatgtctgaacttggtgactttcatgttttgacaagctatctcaacaac