1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATTTGTCAAAGATTGTGGCATCAGGGTGGTCCGGAAGGGTAAAACTGTCCATGTCGGTGTTCTTGATTCTCTTAAACGGGTTAAAGAAAACGTGAAAGAGgtaaactatcaacttccgtcttacatgcatagaacatggaaggagaaagtagagtcatactaaactatcgacttccatttcacacgctgaaatatgtccaaatctaaaccaaattttgacttatcaaccttttcaactttcttacttggtag
species | Arabidopsis thaliana |
transcript | AT1G17220.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ATGTCGGTGTTCTTGATTCTCTTAAACGGGTTAAAGAAAACGTGAAAGAG GTGAGTGCTGGATTAGAATGTGGTATTGGTAEST: gi|125140380|gb|EL178661.1|EL178661
genomic: ATGTCGGTGTTCTTGATTCTCTTAAACGGGTTAAAGAAAACGTGAAAGAGgtaaactatc ... tacttggtagGTGAGTGCTGGATTAGAATGTGGTATTGGTA
EST: ATGTCGGTGTTCTTGATTCTCTTAAACGGGTTAAAGAAAACGTGAAAGAG GTGAGTGCTGGATTAGAATGTGGTATTGGTATGGATGACTACGATGEST: gi|116424651|gb|EG467243.1|EG467243
genomic: ATGTCGGTGTTCTTGATTCTCTTAAACGGGTTAAAGAAAACGTGAAAGAGgtaaactatc ... tacttggtagGTGAGTGCTGGATTAGAATGTGGTATTGGTATGGATGACTACGATG
EST: ATGTCGGTGTTCTTGATTCTCTTAAACGGGTTAAAGAAAACGTGAAAGAG GTGAGTGCTGGATTAGAATGTGGTATTGGTATGGATGACTACGATGATTGGEST: gi|124947393|gb|EL023235.1|EL023235
genomic: ATGTCGGTGTTCTTGATTCTCTTAAACGGGTTAAAGAAAACGTGAAAGAGgtaaactatc ... tacttggtagGTGAGTGCTGGATTAGAATGTGGTATTGGTATGGATGACTACGATGATTGG
EST: ATGTCGGTGTTCTTGATTCTCTTAAACGGGTTAAAGAAAACGTGAAAGAG GTGAGTGCTGGATTAGAACGTGGTAT
genomic: ATGTCGGTGTTCTTGATTCTCTTAAACGGGTTAAAGAAAACGTGAAAGAGgtaaactatc ... tacttggtagGTGAGTGCTGGATTAGAATGTGGTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTGTCAAAGATTGTGGCATCAGGGTGGTCCGGAAGGGTAAAACTGTCCATGTCGGTGTTCTTGATTCTCTTAAACGGGTTAAAGAAAACGTGAAAGAGgtaaactatcaacttccgtcttacatgcatagaacatggaaggagaaagtagagtcatactaaactatcgacttccatttcacacgctgaaatatgtccaaatctaaaccaaattttgacttatcaaccttttcaactttcttacttggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA