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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCACATCTAATGGGGCTCAAGTCAAACCACGTGATGGGCTCTTCTGGTTTGGGAAACCAGAAATTCTGCTACGGTTGATACAATTTATCATTTTTCAGgtaagcaaaaagacttttcctttctcaattcttcaagccatgatattactctattcacacagatgatccttatatatttcctgctaatgcag

Basic information

species Arabidopsis thaliana
transcript AT1G11000.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G11000.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv12s0035g00260.t01 (Vitis vinifera), 5'ss of exon 11
AGGCACATCTAATGGGGCTCAAGTCAAACCACGTGATGGGCTCTTCTGGTTTGGGAAACCAGAAATTCTGCTACGGTTGATACAATTTATCATTTTTCAGgtaagcaaaaagacttttcctttctcaattcttca---agccatgat-attactctattcacacagatgatccttat-atatttcctgctaatgcag
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AGGCCCACAGGTTGGAACTCAAGTAAAGCCACGGGATGAGCTGTTTTGGTTTGGAAAACCAGAAATATTGTTACGGTTGATACAATTTATCATATTTCAGgtgatgatgatgatattcacaacttgtgttttatatatgaccttggttatttctctatcttggattataaccctcattgtgtttcttgtgtatgcag