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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATACTCTGCCTTTTATTCTTGAGGGAAAACAAGTTTGCATCAAAACTTTCGGAGTACAGATATCCATAATCGACTTTACTCTTTCAAGAATCAATACAGgtgggtttctgattctcaatactgcgacataatgtaaaccataaggtccaatctaacacttaaacagttaaactaccaataatcatggtgctaatgtgctcag

Basic information

species Arabidopsis thaliana
transcript AT1G09450.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G09450.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv14s0060g00450.t01 (Vitis vinifera), 5'ss of exon 11
GATACTCTGCCTTTTATTCTTGAGGGAAAACAAGTTTGCATCAAAACTTTCGGAGTACAGATATCCATAATCGACTTTACTCTTTCAAGAATCAATACAGgtgggtttctgattctcaatactgcgacataatgtaaaccataaggtccaatctaacacttaaacagttaaactaccaataatcatggtgctaatgtgctcag
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GAAATGTTGCAGTTCACTCTTGAGGGAAAGAATATGTTTGTCAAAACATTTGGATTGTCAATATCCATAATTGATTTTACTCTTTCCAGAATCAATACTGgtgaaatctacactcttatcactatcttttggcaca---tctgaggtcaaatctattgctgattcagc-aaacta--aactagcattatt----tatgcacag