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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAAGCATGTGCTCATCCGTTTTTCAATGAACTCCGAGAGCCAAACGCCCGTCTTCCAAATGGTCGTCCATTACCGCCATTGTTCAATTTCAAACAAGAGgtaaaaatcaatagcaaaggatgatgtttctttagtggaacttcaacataacccaatttgttctttggatgtggaaacag

Basic information

species Arabidopsis thaliana
transcript AT1G06390.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G06390.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA06G42840.1 (Glycine max), 5'ss of exon 11
CGAAGCATGTGCTCATCCGTTTTTCAATGAACTCCGAGAGCCAAACGCCCGTCTTCCAAATGGTCGTCCATTACCGCCATTGTTCAATTTCAAACAAGAGgtaaaaatcaatagcaaaggatgatgtttctttagtggaacttcaacataacccaatttgtt--ctttggatgtggaaacag----------------------
 ||||||||||| ||||| || ||  |||| || || |||||||| ||||||||||| ||||| | |||| | || ||| | ||||| |||||||| |||||| | |||  |||       |  | ||   |  |||  |  ||||          ||||||  |  |  ||   | | | |                      
GGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCCCGTCTTCCTAATGGCCATCCACTGCCCCCACTTTTCAACTTCAAACAGGAGgtatatatct-tagtcgtattttttattaaat--gtgacatgtcaaggctgtt-gctttgtttaccattcataaagtatctgtatgactacctactatacatct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164159136|gb|ES130213.1|ES130213
EST:     TTTCAAACAAGAG                         TTAGGTGGAGCTTCAATGGAGCTAATCAACAGGCTAATACCTGAGCATGTG
genomic: TTTCAAACAAGAGgtaaaaatca ... gtggaaacagTTAGGTGGAGCTTCAATGGAGCTAATCAACAGGCTAATACCTGAGCATGTG
EST: gi|125243607|gb|EL257692.1|EL257692
EST:     CCGCCATTGTTCAATTTCAAACAAGAG                         TTAGGTGGAGCTTCAATGGAGCTAATCAACAGGCTAATACCTGAGCATGTG
genomic: CCGCCATTGTTCAATTTCAAACAAGAGgtaaaaatca ... gtggaaacagTTAGGTGGAGCTTCAATGGAGCTAATCAACAGGCTAATACCTGAGCATGTG