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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGATAAGCGGTCCAAACTACCTGGTTGGATACTTTCGCATCTGCGTGATGCACACTTGAATCTAAGCACTGATATGGCTATTCACATTGCTCGAGAGgtaaacctataactcgctgcttttttataactcacagtgaaacaaacaacaaggcataaagaatcaacaattttcctggtttttgttttttttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G03190.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G03190.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: LOC_Os05g05260.1 (Oryza sativa), 5'ss of exon 10
TCATGATAAGCGGTCCAAACTACCTGGTTGGATACTTTCGCATCTGCGTGATGCACACTTGAATCTAAGCACTGATATGGCTATTCACATTGCTCGAGAGgtaaac-ctataactcgctgcttttttataactcacagtgaaacaaacaacaaggcataaagaatcaacaattttcctggtttttgttttttttgcag----
 |||||||| ||||| ||||| ||||| |||||||| || ||  | | |||||| ||| | ||||| ||||||||||||||| | || || ||||| ||||||    | |||||    |  |||| | | |||     | |   |      |  || | ||| |     | || |  |  |||          |  |     
CCATGATAAACGGTCTAAACTGCCTGGGTGGATACTGTCACACTTACATGATGCGCACCTAAATCTGAGCACTGATATGGCTTTGCATATAGCTCGTGAGgtatgttccataacat-ttatttttctttgactggtgct-atgtagtttgaattgcttcaagtactgtaacttgtaatcatttaaagagcaagtttatctct

upper sequence: AT1G03190.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GRMZM2G097605_T02 (Zea mays), 5'ss of exon 5
TCATGATAAGCGGTCCAAACTACCTGGTTGGATACTTTCGCATCTGCGTGATGCACACTTGAATCTAAGCACTGATATGGCTATTCACATTGCTCGAGAGgtaaacct-ataactcgctgcttttttataactcacagtgaaacaaacaaca----aggcataaagaatcaacaattttcctggtttttgttttttttgcag
 |||||||| ||||||||  | ||||| |||||||| |||||| ||| |||||| ||| | ||||| ||||||||||||||| | || || ||||| ||||||  | | | |  |   |  |  || |   ||  |  | || |             |||     | ||   |||      | | |     |||| ||    
GCATGATAAACGGTCCAAGTTGCCTGGGTGGATACTCTCGCATTTGCATGATGCGCACCTAAATCTGAGCACTGATATGGCTCTCCATATAGCTCGTGAGgtatgctttacagatttgttttacttgactgcttcctttaaagcttctgttgctttcggctatgcggatttgcaaagcaatttgctgccaattttattat--

upper sequence: AT1G03190.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv07s0104g00060.t01 (Vitis vinifera), 5'ss of exon 11
TCATGATAAGCGGTCCAAACTACCTGGTTGGATACTTTCGCATCTGCGTGATGCACACTTGAATCTAAGCACTGATATGGCTATTCACATTGCTCGAGAGgtaaacctataactcgctgcttttttataactcacagtgaaacaaacaacaaggcataaagaatcaacaattttcctggtt--tttgttttttttgcag------
||||||||| || || ||| | ||||| ||||| || || ||| | |||||||||||| ||||| | |||||||| |||||| | || ||||| |||||||||   ||    ||   ||| | |  | || ||    |   |   ||        | |    || | |  |    || |    | || ||   | | ||      
TCATGATAAACGCTCTAAATTGCCTGGGTGGATTCTGTCACATTTACGTGATGCACACCTGAATTTGAGCACTGACATGGCTTTGCATATTGCACGAGAGgtatgtct----cttattgcgtgtccacaa-tcttgatattattgaccttggaaaacatgagataatctgtcagacttgaaagtatggttcaataggagcatgtc