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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGACCAATCTACAAGCAAATTGCAGAAAATCGAAACGCCGAGATATTCTCTGCCAACACGCTTCTCGTTATTCTTGGGACTAGTTTACTGACAGCTAGGgtatgaccgtgaccttgttggcattgagtagtttactgacatgccagtacttcccgtctgctaatttttccagtttctataaatcag

Basic information

species Arabidopsis thaliana
transcript AT1G01790.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G01790.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: LOC_Os04g58620.1 (Oryza sativa), 5'ss of exon 11
TCGACCAATCTACAAGCAAATTGCAGAAAATCGAAACGCCGAGATATTCTCTGCCAACACGCTTCTCGTTATTCTTGGGACTAGTTTACTGACAGCTAGGgtatg-accgtgaccttgttggcattgag--tagtttactgacatgccagtacttcccgtctgctaatttttccagtttctataaatcag
||| ||||| |||||||||||||| |||||| | ||||| |||||||| || || || || || || |||||| |||| || ||| | || |||||| ||||||| |   |   ||| ||       ||  | |  || |  ||| ||   | |   | | |||   || ||  | | |||  |  ||||
TCGTCCAATTTACAAGCAAATTGCTGAAAATAGGAACGCTGAGATATTTTCAGCAAATACTCTCCTTGTTATTTTTGGAACAAGTCTTCTCACAGCTCGGgtatgtatatttttcttattatatcccagccttgcatagttgcattccttgaatctac-tttgcatgttgttttactctct-catttcag

upper sequence: AT1G01790.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA09G39770.1 (Glycine max), 5'ss of exon 14
TCGACCAATCTACAAGCAAATTGCAGAAAATCGAAACGCCGAGATATTCTCTGCCAACACGCTTCTCGTTATTCTTGGGACTAGTTTACTGACAGCTAGGgtatgac---cgtgaccttgttggcattgagtagtttactgacatgccagtacttcccgtctgctaatttttccagtttctata--aatcag----------
||||||||| ||||||||  |||||||||||| ||| || || || ||||| ||||| || || || ||||||||||| || ||| | || ||||| || ||||| |    ||||   |  |     |    | ||||    | |    |   ||     || || || |||  | ||  | ||  ||| ||          
TCGACCAATATACAAGCAGGTTGCAGAAAATCAAAATGCAGAAATTTTCTCAGCCAATACACTCCTTGTTATTCTTGGCACAAGTCTTCTTACAGCCAGAgtatgtcatatgtgattgtcctattgcttttcattttatc--ctttttgggtgtttgttccttctcatgtttttatttattgtagaaatgagcaaatttttc

upper sequence: AT1G01790.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA18G46420.1 (Glycine max), 5'ss of exon 18
TCGACCAATCTACAAGCAAATTGCAGAAAATCGAAACGCCGAGATATTCTCTGCCAACACGCTTCTCGTTATTCTTGGGACTAGTTTACTGACAGCTAGGgtatgac---cgtgaccttgttggcattgagtagttta-ctgacatgccagtacttcccgtctgctaatttttccagtttctataaatcag----------
||||||||| ||||||||  |||||||||||| ||| || || || ||||| || || || || || ||||||||||| || ||| | || ||||| |||||||| |    ||||   |  |     |   || |||| |   | ||   ||   | || |||  |  ||||     ||  || |||| ||          
TCGACCAATATACAAGCAGGTTGCAGAAAATCAAAATGCAGAAATTTTCTCAGCTAATACACTCCTTGTTATTCTTGGCACAAGTCTTCTTACAGCCAGGgtatgtcatatgtgattgtcctattgctttttattttatccttcttgggtgtttgttccttctcatgtttttgttcattg-tagaaatgagcaacttttca

upper sequence: AT1G01790.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv15s0046g03390.t01 (Vitis vinifera), 5'ss of exon 9
TCGACCAATCTACAAGCAAATTGCAGAAAATCGAAACGCCGAGATATTCTCTGCCAACACGCTTCTCGTTATTCTTGGGACTAGTTTACTGACAGCTAGGgtatgaccgtgaccttgttggcattgagtagtttactgacatgccagt-acttcccgtctgctaatttttccagtttctataaatcag-------------
| ||||||| || ||||||||||| ||||||| ||| || |||||||| |||||||| || ||||| |||||  | ||||||||| | || ||||| |||||||     ||   ||  |     | | || | |  |   || ||| | |  |   |||| |   ||||| |  |    | ||||||              
TAGACCAATTTATAAGCAAATTGCTGAAAATCAAAATGCAGAGATATTTTCTGCCAATACACTTCTTGTTATCTTGGGGACTAGTCTCCTTACAGCCAGGgtattgg-atgcttttcataattattattattcttttcttataccaatcaagttgtgtctccc--ttttttccttaagaaaaaatcatttttcttgaacag