1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AAAGCAAAGACAGTGGCTGCGGATAAGAAGAAGAAGAATAGGGAAGCGTCAAAGCAGATCCACGCATTAGAAAATATCGAAGAGGGCCGCGTCACTAAAGgtatcatacaaatcctgtttgttgttaaactctttcgttagtcggtgcattttactaaaaaaataaaatttaaaaaacattctag
species | Arabidopsis thaliana |
transcript | AT5G64740.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AAGCAGATCCACTGCATTAGAAAATATCGAAGAGGGCCGCGTCACTAAAG GTTCTAACGTAGAACAGTCAACCGAGGCAATGCAAATGAAGTEST: gi|19797487|gb|AU229295.1|AU229295
genomic: AAGCAGATCCAC-GCATTAGAAAATATCGAAGAGGGCCGCGTCACTAAAGgtatcataca ... aacattctagGTTCTAACGTAGAACAGTCAACCGAGGCAATGCAAATGAAGT
EST: AAGCAGATCCACGCATTAGAAAATATCGAAGAGGGCCGCGTCACCTAAAG GTTCTAACGTAGAACAGTCAACCGAGGCAATGCAAATGAAGTTGGAGAAG
genomic: AAGCAGATCCACGCATTAGAAAATATCGAAGAGGGCCGCGTCAC-TAAAGgtatcataca ... aacattctagGTTCTAACGTAGAACAGTCAACCGAGGCAATGCAAATGAAGTTGGAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGCAAAGACAGTGGCTGCGGATAAGAAGAAGAAGAATAGGGAAGCGTCAAAGCAGATCCACGCATTAGAAAATATCGAAGAGGGCCGCGTCACTAAAGgtatcatacaaatcctgtttgttgttaaactctttcgttagtcggtgcattttactaaaaaaataaaatttaaaaaacattctag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG