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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGGTCTCAATCGATATGCCTGCTGGTCCTTCAGAAGTCCTAGTTATTGCTGACGAACATGCTAGTCCAGTTTACATTGCAGCAGACTTACTTTCTCAGgtatttccatgaaaaagttgcaattttcaacataacatatcgggatgagtttgtgtctgccttatttgtttaattcagacctacagagagcggctaacttgtacatttctttttttggtttctctgcag

Basic information

species Arabidopsis thaliana
transcript AT5G63890.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G63890.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv18s0166g00300.t01 (Vitis vinifera), 5'ss of exon 12
AATGGTCTCAATCGATATGCCTGCTGGTCCTTCAGAAGTCCTAGTTATTGCTGACGAACATGCTAGTCCAGTTTACATTGCAGCAGACTTACTTTCTCAGgtatttccatgaaaaagttgcaattttcaacataacatatcgggatgagtttgtgtctgccttatttgtttaattcagacctacagagagcggctaacttgtacatttctttttttggtttctctgcag
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TATGGTTTCAATTGATATGCCTGCGGGTCCATCAGAAGTTCTAGTCATTGCCGACAAACATGCTAATCCTGTTCATATTGCTGCAGATTTGTTGTCCCAGgtgt----gtaatcattttgtaatgcttgttataatttttgatggaccacttccatatatctaggtcaagtaagttat-tctatgttttctgcttatctaatatg------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124937027|gb|EL013850.1|EL013850
EST:     CTGACGAACATGCTAGTCCAGTTTACATTGCAGCAGACTTACTTTCTCAG                         GCGGAAGCATGGTCCAGATAGTCAAGTTGTT
genomic: CTGACGAACATGCTAGTCCAGTTTACATTGCAGCAGACTTACTTTCTCAGgtatttccat ... ttctctgcagGCGGA-GCATGGTCCAGATAGTCAAGTTGTT