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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGAAATTGCCAAGCAGTGCAAAAGCCTTCCTAGAGGAGAGTTTGCTTCAAAAGCACTAAGTCACAGTTTCACAGTGTTTGCTCGAGATATGATTGAGgtacccatctctttacggttcacctttactgttactatctcaaaacaacatctgtaacatcatcactgtttgttctttaattctccag

Basic information

species Arabidopsis thaliana
transcript AT5G63890.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G63890.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv18s0166g00300.t01 (Vitis vinifera), 5'ss of exon 13
AGAAGAAATTGCCAAGCAGTGCAAAAGCCTTCCTAGAGGAGAGTTTGCTTCAAAAGCACTAAGTCACAGTTTCACAGTGTTTGCTCGAGATATGATTGAGgt-acccatctc-tttacggttcacctttactgttactatctcaaaacaacatct-gta---acatcatcactgtttgttctttaattctccag------
 || |||||   |||||||||| |||||||||| |||||||||||||||||||||||  | || ||||||||||| |||||||||||  ||||| ||||||| |    |||  ||   | ||     | | | ||| | | |  ||      | | |||   | ||    | ||||||     || |  |          
GGAGGAAATCAGCAAGCAGTGCCAAAGCCTTCCAAGAGGAGAGTTTGCTTCAAAAGCTTTGAGCCACAGTTTCACTGTGTTTGCTCGCAATATGGTTGAGgttagtggtcttattcttgattggggctgattcttaattttttgaatttgttttttgtatgcatatttagattgtttggaaaatagtgattggatgcaga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116411553|gb|EG454145.1|EG454145
EST:     CAAAAGCACTAAGTCACAGTTTCACAGTGTTTGCTCGAGATATGATTGAG                         GCAATATCTTTCTCAAATCTATATGCACCCGAACATTTGATCATCAATGTC
genomic: CAAAAGCACTAAGTCACAGTTTCACAGTGTTTGCTCGAGATATGATTGAGgtacccatct ... aattctccagGCAATATCTTTCTCAAATCTATATGCACCCGAACATTTGATCATCAATGTC
EST: gi|125260618|gb|EL274703.1|EL274703
EST:     CTAAGTCACAGTTTCACAGTGTTTGCTCGAGATATGATTGAG                         GCAATATCTTTCTCAAATCTATATGCACCCGAACATTTGATCATCAA
genomic: CTAAGTCACAGTTTCACAGTGTTTGCTCGAGATATGATTGAGgtacccatct ... aattctccagGCAATATCTTTCTCAAATCTATATGCACCCGAACATTTGATCATCAA
EST: gi|86080839|gb|DR376596.1|DR376596
EST:     CAAAAGCACTAAGTCACAGTTTCACAGTGTTTGCTCGAGATATGATTGAG                         GCAATATCTTTCTCAAATCTATATGCACCCGAACATTTGATCATCAATGTC
genomic: CAAAAGCACTAAGTCACAGTTTCACAGTGTTTGCTCGAGATATGATTGAGgtacccatct ... aattctccagGCAATATCTTTCTCAAATCTATATGCACCCGAACATTTGATCATCAATGTC