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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCATTGATTCCTTAAAAACTAGGATAGTCAAAGAAAATCACAGCAGAAAGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagtttttttgactaaaaatccatggaaaagtcctacttttactccaaaatcttccttttcttgacag

Basic information

species Arabidopsis thaliana
transcript AT5G62240.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116430545|gb|EG473137.1|EG473137
EST:     AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG                         ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: gi|116430547|gb|EG473139.1|EG473139
EST:     AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG                         ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: gi|116430546|gb|EG473138.1|EG473138
EST:     AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG                         ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: gi|116430548|gb|EG473140.1|EG473140
EST:     AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG                         ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: gi|116430549|gb|EG473141.1|EG473141
EST:     AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG                         ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: gi|116430536|gb|EG473128.1|EG473128
EST:     AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG                         ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: gi|116430559|gb|EG473151.1|EG473151
EST:     AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG                         ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: gi|116430537|gb|EG473129.1|EG473129
EST:     AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG                         ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: gi|116430560|gb|EG473152.1|EG473152
EST:     AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG                         ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: gi|116430541|gb|EG473133.1|EG473133
EST:     AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG                         ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: gi|116430542|gb|EG473134.1|EG473134
EST:     AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG                         ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: gi|116430555|gb|EG473147.1|EG473147
EST:     AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG                         ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: gi|116430540|gb|EG473132.1|EG473132
EST:     AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG                         ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: gi|116430552|gb|EG473144.1|EG473144
EST:     AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG                         ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: gi|116430551|gb|EG473143.1|EG473143
EST:     AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG                         ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: gi|116430556|gb|EG473148.1|EG473148
EST:     AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG                         ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: gi|116430558|gb|EG473150.1|EG473150
EST:     AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG                         ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: gi|116430544|gb|EG473136.1|EG473136
EST:     AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG                         ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: gi|116430554|gb|EG473146.1|EG473146
EST:     AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG                         ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: gi|116430538|gb|EG473130.1|EG473130
EST:     AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG                         ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT