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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAAATCTATGGAAATTCCATAAGAAGCTCTGTTGGTATGTCCAACATTCGTAAAATGATAGGAGTTTGTCCTCAGgtattgtcaattttcttccttcattgtcctcatcacacaaaacaaccttctaatcattatgctagcttaaaatggtttatgactctatcactctttttttacag

Basic information

species Arabidopsis thaliana
transcript AT5G61730.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G61730.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv17s0000g05850.t01 (Vitis vinifera), 5'ss of exon 10
CAAAAATCTATGGAAATTCCATAAGAAGCTCTGTTGGTATGTCCAACATTCGTAAAATGATAGGAGTTTGTCCTCAGgtattgtcaattttcttccttcattgtcctcatcacacaaaacaaccttctaatcattatg-ctagcttaaaatggtttatgactctatcactctttttttacag
||  ||| |||||| |||||||  |||||||||| || ||||| |||||||| | ||| |||||||||||||| |||||         ||| || |||   | || || | |  ||||  || ||  |  |||  | | ||  |||||| |  ||| |      |                 
CATTAATATATGGATATTCCATTCGAAGCTCTGTAGGAATGTCAAACATTCGAAGAATCATAGGAGTTTGTCCCCAGgtgaccctttctttttttctttggtttcatctttattcaaataaatctagttttcaagaggactgacttaaatttttttcttttcacag----------------