1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGAGCCAATGTATAACAAACTTGCCAAGCATTTACGAAGTATTGATTCTCTCGTCATAACCAAGATGGATGGAACAACCAATGAACATCCCAAGGCAAAGgtaataaacttatcaaatatacatctctagacatcgataacttctacttgaaaaacctcaagagttaattctttacag
species | Arabidopsis thaliana |
transcript | AT5G60640.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TCGTCATAACCAAGATGGATGGAACAACCAATGAACATCCCAAGGCAAAG GCTGAGGGGTTCCCTACCATTCTCTTCTTCCCTGCGGGCAACAAGACTTCEST: gi|86054026|gb|DR349783.1|DR349783
genomic: TCGTCATAACCAAGATGGATGGAACAACCAATGAACATCCCAAGGCAAAGgtaataaact ... ttctttacagGCTGAGGGGTTCCCTACCATTCTCTTCTTCCCTGCGGGCAACAAGACTTC
EST: TCGTCATAACCAAGATGGATGGAACAACCAATGAACATCCCAAGGCAAAG GCTGAGGGGTTCCCTACCATTCTCTTCTTCCCTGCGGGCAACAAGACTTCAEST: gi|86074845|gb|DR370602.1|DR370602
genomic: TCGTCATAACCAAGATGGATGGAACAACCAATGAACATCCCAAGGCAAAGgtaataaact ... ttctttacagGCTGAGGGGTTCCCTACCATTCTCTTCTTCCCTGCGGGCAACAAGACTTCA
EST: TCGTCATAACCAAGATGGATGGAACAACCAATGAACATCCCAAGGCAAAG GCTGA-GGGTTCCCTACCATTCTCTTCTT-CCTGCGGGCAACAAGACTTCAEST: gi|86054033|gb|DR349790.1|DR349790
genomic: TCGTCATAACCAAGATGGATGGAACAACCAATGAACATCCCAAGGCAAAGgtaataaact ... ttctttacagGCTGAGGGGTTCCCTACCATTCTCTTCTTCCCTGCGGGCAACAAGACTTCA
EST: TCGTCATAACCAAGATGGATGGAACAACCAATGAACATCCCAAGGCAAAG GCTGAGGGGTTCCCTACCATTCTCTTCTTCCCTGCGG-CAACAAGACTTCAEST: gi|124948483|gb|EL024225.1|EL024225
genomic: TCGTCATAACCAAGATGGATGGAACAACCAATGAACATCCCAAGGCAAAGgtaataaact ... ttctttacagGCTGAGGGGTTCCCTACCATTCTCTTCTTCCCTGCGGGCAACAAGACTTCA
EST: TCGTCATAACCAAGATGGATGGAACAACCAATGAACATCCCAAGGCAAAG GCTGAGGGGTTCCCTACCATT
genomic: TCGTCATAACCAAGATGGATGGAACAACCAATGAACATCCCAAGGCAAAGgtaataaact ... ttctttacagGCTGAGGGGTTCCCTACCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGCCAATGTATAACAAACTTGCCAAGCATTTACGAAGTATTGATTCTCTCGTCATAACCAAGATGGATGGAACAACCAATGAACATCCCAAGGCAAAGgtaataaacttatcaaatatacatctctagacatcgataacttctacttgaaaaacctcaagagttaattctttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG