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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGATGACGATCAGCTGCGCCGATCTCCCGGGACTCCTGTCTTCACTGCTCCAGAATGTTGTTTAGgtcagtttcctttctaatttctctaagcttggtcctgagtctaagtgaatggagaatcaacgagtatcatttttcttggatgaaaatcag

Basic information

species Arabidopsis thaliana
transcript AT5G60550.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G60550.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: PP1S59_209V6.1 (Physcomitrella patens), 5'ss of exon 8
GATGATGACGATCAGCTGCGCCGATCTCCCGGGACTCCTGTCTTCACTGCTCCAGAATGTTGTTTAGgtcagtttcctt--tctaatttctctaagcttggtcctgagtctaagtgaatgga-gaatcaa---cgagtatcatttttcttggatgaaaatcag--------------------------------------------------------------------------------
   |  ||||||||  || | |||||||||||||| ||||||| ||| ||||| |||||||| | |||| |  || ||   | | |||||   | |     |||| |    ||| |  ||   |  |  |    | |  || |  |||| | |  |||   |                                                                                 
---GGAGACGATCATGTGAGGCGATCTCCCGGGACCCCTGTCTACACAGCTCCGGAATGTTGCTCAGgtaaactttctcgctttcatttcaaaaggaaccctcctcatcgcaagggtgtgcttgccttgagcctgtgcttcgtcattctcgaaacaaatctatccttcttcaccaggaactttgttgatgttgtaagcacgttacactgctgatggctttttctcatgctattgctccaccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124881849|gb|EH960751.1|EH960751
EST:     GCGCCGATCTCCCGGGACTCCTGTCTTCACTGCTCCAGAATGTTGTTTAG                         TATCAGGTATAACGTATAGTGG
genomic: GCGCCGATCTCCCGGGACTCCTGTCTTCACTGCTCCAGAATGTTGTTTAGgtcagtttcc ... tgaaaatcagTATCAGGTATAACGTATAGTGG
EST: gi|125277853|gb|EL291938.1|EL291938
EST:     GCGCCGATCTCCCGGGACTCCTGTCTTCACTGCTCCAGAATGTTGTTTAG                         TATCAGGTATAACGTATAGTGGCAGAGCTGCGGAT
genomic: GCGCCGATCTCCCGGGACTCCTGTCTTCACTGCTCCAGAATGTTGTTTAGgtcagtttcc ... tgaaaatcagTATCAGGTATAACGTATAGTGGCAGAGCTGCGGAT