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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGGATTGCTCCAGGCGGCTTCAACTTTGACGCTAAACTgtaagagcgattcttgattcacaatgttttactgtttcatacaaaattaaaccgagaaagaagcttataatgtttggttgattaaacag

Basic information

species Arabidopsis thaliana
transcript AT5G57655.2
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164134664|gb|ES146920.1|ES146920
EST:     CAACTTTGACGCTAAACT                         GCGAAGAGAGAGTACAGACGTGGAAGACTTATTCATTGCTCATATTAGTGG
genomic: CAACTTTGACGCTAAACTgtaagagcga ... gattaaacagGCGAAGAGAGAGTACAGACGTGGAAGACTTATTCATTGCTCATATTAGTGG
EST: gi|86084312|gb|DR380071.1|DR380071
EST:     GGTGGGATTGCTCCAGGCGGCTTCAACTTTGACGCTAAACT                         GCGAAGAGAGAGTACAGACGTGGAAGACTTATTCATTGCTCATATTAGTGG
genomic: GGTGGGATTGCTCCAGGCGGCTTCAACTTTGACGCTAAACTgtaagagcga ... gattaaacagGCGAAGAGAGAGTACAGACGTGGAAGACTTATTCATTGCTCATATTAGTGG
EST: gi|124850562|gb|EH934999.1|EH934999
EST:     GGTGGGATTGCTCCAGGCGGCTTCAACTTTGACGCTAAACT                         GCGAAGAGAGAGTACAGACGTGGAAGACTTATTCATT
genomic: GGTGGGATTGCTCCAGGCGGCTTCAACTTTGACGCTAAACTgtaagagcga ... gattaaacagGCGAAGAGAGAGTACAGACGTGGAAGACTTATTCATT