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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTTGGAACTTCAACTGTTGTCTTCACCAGAACCGGTTTCATGGCCATATTGTTAAGTCACTATCGTCCTTCCGGCACAATCTATGCCTTCACAAATGAgtaagtatttcatgtttattcttttagaacaatgtattttgtcgtaggaactcacagtagaggttttgctctgtag

Basic information

species Arabidopsis thaliana
transcript AT5G52920.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G52920.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA16G28980.1 (Glycine max), 5'ss of exon 10
CACTTGGAACTTCAACTGTTGTCTTCACCAGAACCGGTTTCATGGCCATATTGTTAAGTCACTATCGTCCTTCCGGCACAATCTATGCCTTCACAAATGAgtaagtatttcatgtttattcttttagaacaa---------tgtattttgtcgtaggaactcacagtagaggttttgctctgtag----------------
| |||||||| ||||||||||||||||| ||||| |||||||||||  |  |  | ||||||||||||||||| || || || | ||| || ||| |||||| |||  ||  |||    |  ||    | ||         | |||||| |   || |||| | | | ||  ||||| | | |                  
CCCTTGGAACCTCAACTGTTGTCTTCACTAGAACGGGTTTCATGGCTGTCCTTCTGAGTCACTATCGTCCTTCTGGGACCATATTTGCTTTTACAGATGAgtgagttctttttgtccccttcttattgataaaaaggcacttatatttttttaaagaaacttata-tggatattttgatttttccccttgtttgacatttg

upper sequence: AT5G52920.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA09G23150.1 (Glycine max), 5'ss of exon 10
CACTTGGAACTTCAACTGTTGTCTTCACCAGAACCGGTTTCATGGCCATATTGTTAAGTCACTATCGTCCTTCCGGCACAATCTATGCCTTCACAAATGAgtaagtatttcatgtttattcttt-----tagaacaa----tgtattttgtcgtaggaactcacagtagaggttttgctctgtag----------------
| |||||||| ||||||||||||||||| ||||| |||||||||||  |  |  | || || ||||||||||| ||||| || | ||| || ||| |||||| |||  ||  |||    |  ||     || ||  |    | |||||| |   || ||||   | | ||  ||||| | | |                  
CTCTTGGAACCTCAACTGTTGTCTTCACTAGAACGGGTTTCATGGCTGTCCTTCTGAGCCATTATCGTCCTTCGGGCACCATATTTGCTTTTACAGATGAgtgagttctttttgtccccttcttatcgataaaatgacttatatatttttttaaagaaacttgta-tggatattttgatttttttcccttgtttgacattt

upper sequence: AT5G52920.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA20G30430.1 (Glycine max), 5'ss of exon 10
CACTTGGAACTTCAACTGTTGTCTTCACCAGAACCGGTTTCATGGCCATATTGTTAAGTCACTATCGTCCTTCCGGCACAATCTATGCCTTCACAAATGAgtaagta--tttcatgtttattcttttagaacaatgtattttgtcgtaggaactcacagtagaggttttgctctgtag----------------------
| |||||||| ||||||||||||||||| ||| | || |||||||| ||  | || || |||||||| ||||| ||||| || | ||| || ||| || |||||||   |||  |     |||| ||   || ||    | | |  ||  ||   | | || ||    |  |   ||                       
CCCTTGGAACCTCAACTGTTGTCTTCACTAGATCAGGCTTCATGGCTATCCTTTTGAGCCACTATCGACCTTCAGGCACCATATTTGCTTTTACAGATCAgtaagttactttttttccctttctcttgataccataagatattttttaaaaaagaaaactacagaagataatagttaaacatgaacctaacttagtagca