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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGCCCGATCTTCATCGGCTGCATGAATGGCACTTTAGATCAGGCCTTGATCGCTACATATGGATCATCGGAATGATTTATGCCTATTATCACCCAACTgtaagttcttacttccatttttttccgttttttgtagtgtcgatgtaataaacttcaaaacttgggatcattctctag

Basic information

species Arabidopsis thaliana
transcript AT5G46340.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G46340.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os01g44040.1 (Oryza sativa), 5'ss of exon 9
CAAGCCCGATCTTCATCGGCTGCATGAATGGCACTTTAGATCAGGCCTTGATCGCTACATATGGATCATCGGAATGATTTATGCCTATTATCACCCAACTgtaagttctta---cttccatttttttccgttttttgtagtgtcgatgtaa------taaacttcaaaacttggg-atcattctctag-------------------------------------------------------------------------------------
 ||  |  |  | |  | | ||||||| ||||| ||  |||| ||||||||||| || |||||||| || |||||||| |||||||| |  || |||| |||||||| | |    |  ||  |   |   |||| | |  | ||  ||||       |   ||||    |||    |||||| | ||                                                                                      
AAAAGCAAACTTACCACTGTTGCATGAGTGGCATTTCCGATCTGGCCTTGATCGTTATATATGGATTATTGGAATGATCTATGCCTACTTCCATCCAAATgtaagttttcaaggatcacagatgactgttttttatttgatatcactgtagagtctttgtccttctgcccttctccatcattgtttatgtaggatgcaattcattatgctatggtttcaggtatttttcttctatcagtagtagtgcttgaaatgtagatctctgtcatacag

upper sequence: AT5G46340.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os05g50510.1 (Oryza sativa), 5'ss of exon 9
CAAGCCCGATCTTCATCGGCTGCATGAATGGCACTTTAGATCAGGCCTTGATCGCTACATATGGATCATCGGAATGATTTATGCCTATTATCACCCAACTgtaagt-------tcttacttccatttttttccgttttttgtagtgtcgatgtaataaacttcaaaacttgggatcattctctag--------------------------------------------------------------------------------------------
|||| |  |  | |  | ||| ||||| ||||| ||  |||| ||||||||||| ||||||||||| || |||||||| ||||| || |  ||||| | |||||||       |  |   ||||  |||   |   ||| | | ||     || |  |  | || |    | | || ||   ||                                                                                             
CAAGGCAAACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTTGATCGATACATATGGATTATTGGAATGATCTATGCTTACTTCCACCCTAATgtaagtaattcggttatggatccacatttcctc-cctttggaactgcatgagtgagcag-tacatataccgtgttcctttcatacatttcttcctagggagttctctcttattttaagaatatgttccttgtttatactatatattaatgtagcatggaatccgctatctgaaatag

upper sequence: AT5G46340.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GRMZM2G076394_T01 (Zea mays), 5'ss of exon 9
CAAGCCCGATCTTCATCGGCTGCATGAATGGCACTTTAGATCAGGCCTTGATCGCTACATATGGATCATCGGAATGATTTATGCCTATTATCACCCAACTgtaagttctt--------acttccatttttttccgttttttgtagtgtcgatgtaataaacttcaaaacttgggatcattctctag----------
 |||    |  | |  | | | || ||||||| |||  | || ||||||||||| |||||||||||||| |||||||||||||| || | |||||| |  ||||||  |         |||  ||||  |      | ||    || ||    | ||     || |||| ||    | |||| |            
TAAGATGAACTTACCCCTGTTACACGAATGGCGCTTCCGCTCTGGCCTTGATCGTTACATATGGATCATTGGAATGATTTATGCTTACTTTCACCCCAACgtaagtgttctaaagagaactgacattcatggagtgtgttaagtgtttcctccttatgttgatctaaacatgcatgccttctatcctgacaacaag

upper sequence: AT5G46340.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GRMZM2G458538_T01 (Zea mays), 5'ss of exon 4
CAAGCCCGATCTTCATCGGCTGCATGAATGGCACTTTAGATCAGGCCTTGATCGCTACATATGGATCATCGGAATGATTTATGCCTATTATCACCCAACTgtaagttctt---------acttccattttttt--ccgttttttg---tagtgtcgatgtaataaacttcaaaac---ttgggat-cattctctag----------------------------------------------------------------------------
|||| |  |  | |  | ||| ||||| ||||| ||  |||| ||||| ||||| ||||||||||| || |||||||||||||| || |  || || | |||||||  ||         || |  |||    |   |    | ||     || || | |  ||    ||  | ||   | |  ||   ||| |||                                                                             
CAAGGCACACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTCGATCGATACATATGGATTATTGGAATGATTTATGCTTACTTCCATCCTAATgtaagtatttcagttatggacctatattaccctgatcaccctctgagactgtatctacgagatgttattggatacgtctcgatatattttccctaatctctatatatattaagcatcgtttcttttgttcagatcatgttaaccttaacatggagccttttgacgtaaacag

upper sequence: AT5G46340.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 10
CAAGCCCGATCTTCATCGGCTGCATGAATGGCACTTTAGATCAGGCCTTGATCGCTACATATGGATCATCGGAATGATTTATGCCTATTATCACCCAACTgtaagttct--tacttccatttttttccgttttttg----tagtgtcgatgtaataaac----------ttcaaaacttgggatcattctctag-----
 ||||| ||||| | |||  ||||||| ||||| || ||||| || |||||||||||||| ||||| || ||||||||||||||||||| ||| |||| |||||  ||   ||||  | ||| |    ||  || |    |  | |  || |||||             ||  ||| |||  ||  ||| | |      
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTATTTTCATCCAAATgtaatctcgaatactagcttttgtagtggtcattgggtaattttttttatataatagttggtccagctattttaaatttgaaatatttcaccatctcag

upper sequence: AT5G46340.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 10
CAAGCCCGATCTTCATCGGCTGCATGAATGGCACTTTAGATCAGGCCTTGATCGCTACATATGGATCATCGGAATGATTTATGCCTATTATCACCCAACTgtaagttct--tacttccatttttttccgttttttg-tagtgtcgatgtaata--------aact--tcaaaacttgggatcattctctag-----
 ||||| ||||| | |||  ||||||| ||||| || ||||| || |||||||||||||| ||||| || ||||||||||||||||| | ||| |||| |||||  ||   ||||  | | | |    ||  || | || | |   | |||||        | ||  |  ||| |||  ||  ||| | |      
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTACTTTCATCCAAATgtaatctccaatactagcttgtgtggtggtcattgggtattttttttataatatttagtccagctattttaaatttgaaatatttcaccatctcag

upper sequence: AT5G46340.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 4
CAAGCCCGATCTTCATCGGCTGCATGAATGGCACTTTAGATCAGGCCTTGATCGCTACATATGGATCATCGGAATGATTTATGCCTATTATCACCCAACTgtaagttcttacttccatttttttc-cgtt--ttttgtagtgtcgatgtaataaacttcaaaacttgggat-cattctctag------
 || |  | ||| | ||| |||||||||||||| |||||||| || ||||||||||| || ||||||||||||||||| ||||||||||||||||| | ||||| || || |    |||  |     | |  |||| |||      | |      |  | ||       ||  ||| | |        
TAAACAAGGTCTCCCTCGACTGCATGAATGGCATTTTAGATCTGGGCTTGATCGCTATATTTGGATCATCGGAATGATATATGCCTATTATCACCCTAATgtaatttttttcaagtattggtacaatgatgattttatagctcttctttctccgtccactaactggtaaatatattttttgttcttag

upper sequence: AT5G46340.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: PP1S357_34V6.1 (Physcomitrella patens), 5'ss of exon 9
CAAGCCCGATCTTCATCGGCTGCATGAATGGCACTTTAGATCAGGCCTTGATCGCTACATATGGATCATCGGAATGATTTATGCCTATTATCACCCAACTgtaagttcttacttccattttt-ttccgttt-------tttgtagt-gtcgatgtaataaacttcaaaacttgggatcattctctag---------------
 |||| |     ||    |||||||||||||||||| |||||||| || ||||| ||||| |||||  | || ||| | ||||| |||| ||| || || |||  ||   | ||  | |||| || ||            | ||||  ||| |  | |   |  ||     ||   | | | ||| |               
AAAGCACCCCACTCCCTTGCTGCATGAATGGCACTTCAGATCAGGACTGGATCGATACATCTGGATTGTGGGCATGCTCTATGCGTATTTTCATCCTACGgta--ttaacatttggacttttgtttcgaaagaaaagacgtatagttatcgtttgagttcgcagcatgttgtgtactaagtttctggcattcttgtcatgac