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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTGGAAACGTTCTGAAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCGgtacaagattactaacctctcttcatatatttttacttattagaccaatcccgaatgaagcaattcaaatacttttacttgtcaaatatttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G46110.3
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G46110.3 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: PP1S450_22V6.1 (Physcomitrella patens), 5'ss of exon 10
CTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTGGAAACGTTCTGAAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCGgtacaagattactaacctc-tcttcatatatttttacttattagaccaatcccgaatgaagca-attcaaatacttttacttgtcaaatatttgcag--------------------------------------------------------------------------------------------------
|| |||| ||| || ||||| |||||||| || |||||||| || || || |||||  |||| || ||||| |||||||| |||||||||||  | ||||||   || ||    ||    |  |  | | | |  | | |   |     |     ||| |||| | |    ||   | |   |   |    | || |                                                                                                  
CTTGCTAACAACACATTGGAAAGGGTTGCTCCCCTGACTCATGCCGTGGGGAACGTGTTGAAGCGAGTGTTTGTGATCGGGTTCTCCATCGTGGTGTTCGgtg--agtttgtggacaaagtggttgtgtttgtggagtgagggggaggttgggacatgcagcagagttgtgtaggatgatgcggggacgggtggcggcgtgttggaatgttgatggaggagttgggtatggagaatggaatagagtggagtgatgttgtgagaaggtttgtaacggcgggattggtggtttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125088125|gb|EL147005.1|EL147005
EST:     TGATCGGTTTCTCCATCGTTATCTTCG                         GAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG
genomic: TGATCGGTTTCTCCATCGTTATCTTCGgtacaagatt ... atatttgcagGAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG
EST: gi|125241410|gb|EL255495.1|EL255495
EST:     AAACGTTCTGAAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCG                         GAAACAAGATA
genomic: AAACGTTCTGAAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCGgtacaagatt ... atatttgcagGAAACAAGATA
EST: gi|163966893|gb|ES102716.1|ES102716
EST:     TCGTGATCGGTTTCTCCATCGTTATCTTCG                         GAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG
genomic: TCGTGATCGGTTTCTCCATCGTTATCTTCGgtacaagatt ... atatttgcagGAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG
EST: gi|164072598|gb|ES202019.1|ES202019
EST:     CGTGTGTTCGTGATCGGTTTACTCCATCGTTATCTTCG                         GAAACAAGATATCGACACAGACAGGTATAGGAACAGG
genomic: CGTGTGTTCGTGATCGGTTT-CTCCATCGTTATCTTCGgtacaagatt ... atatttgcagGAAACAAGATATCGACACAGACAGGTATAGGAACAGG
EST: gi|164118968|gb|ES058894.1|ES058894
EST:     AAACGTTCTGAAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCG                         GAAACAAGATATCGACACAGAC
genomic: AAACGTTCTGAAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCGgtacaagatt ... atatttgcagGAAACAAGATATCGACACAGAC
EST: gi|124981187|gb|EL054072.1|EL054072
EST:     GTGTTCGTGATCGGTTTCTCCATCGTTATCTTCG                         GAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG
genomic: GTGTTCGTGATCGGTTTCTCCATCGTTATCTTCGgtacaagatt ... atatttgcagGAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG
EST: gi|125067684|gb|EL134102.1|EL134102
EST:     AACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCG                         GAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCA
genomic: AACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCGgtacaagatt ... atatttgcagGAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCA
EST: gi|124987755|gb|EL060191.1|EL060191
EST:     CGGTTTCTCCATCGTTATCTTCG                         GAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG
genomic: CGGTTTCTCCATCGTTATCTTCGgtacaagatt ... atatttgcagGAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG
EST: gi|124747979|gb|EH838109.1|EH838109
EST:     AAACGTTCTGAAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCG                         GAAACAAGATATCGACACAGA
genomic: AAACGTTCTGAAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCGgtacaagatt ... atatttgcagGAAACAAGATATCGACACAGA
EST: gi|125241606|gb|EL255691.1|EL255691
EST:     CCATCGTTATCTTCG                         GAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG
genomic: CCATCGTTATCTTCGgtacaagatt ... atatttgcagGAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG
EST: gi|124952966|gb|EL028195.1|EL028195
EST:     AAACGTTCTGAAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCG                         GAGACAAGATATCGACACAGACAGGTA
genomic: AAACGTTCTGAAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCGgtacaagatt ... atatttgcagGAAACAAGATATCGACACAGACAGGTA
EST: gi|125307604|gb|EL321689.1|EL321689
EST:     CGTTATCTTCG                         GAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG
genomic: CGTTATCTTCGgtacaagatt ... atatttgcagGAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG
EST: gi|124955510|gb|EL030518.1|EL030518
EST:     TTTCTCCATCGTTATCTTCG                         GAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG
genomic: TTTCTCCATCGTTATCTTCGgtacaagatt ... atatttgcagGAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG
EST: gi|125284783|gb|EL298868.1|EL298868
EST:     AAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCG                         GAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG
genomic: AAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCGgtacaagatt ... atatttgcagGAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG
EST: gi|124834844|gb|EH919283.1|EH919283
EST:     TGATCGGTTTCTCCATCGTTATCTTCG                         GAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG
genomic: TGATCGGTTTCTCCATCGTTATCTTCGgtacaagatt ... atatttgcagGAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG
EST: gi|124893325|gb|EH972227.1|EH972227
EST:     AAACGTTCTGAAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCG                         GAAACAAGATA
genomic: AAACGTTCTGAAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCGgtacaagatt ... atatttgcagGAAACAAGATA
EST: gi|125020742|gb|EL093011.1|EL093011
EST:     CGTTATCTTCG                         GAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG
genomic: CGTTATCTTCGgtacaagatt ... atatttgcagGAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG
EST: gi|125023925|gb|EL096194.1|EL096194
EST:     CGGTTTCTCCATCGTTATCTTCG                         GAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG
genomic: CGGTTTCTCCATCGTTATCTTCGgtacaagatt ... atatttgcagGAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG
EST: gi|164020462|gb|EL993025.1|EL993025
EST:     AAACGTTCTGAAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCG                         GAAACAAGATATC
genomic: AAACGTTCTGAAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCGgtacaagatt ... atatttgcagGAAACAAGATATC
EST: gi|124796981|gb|EH886660.1|EH886660
EST:     CGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCG                         GAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG
genomic: CGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCGgtacaagatt ... atatttgcagGAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG
EST: gi|124788797|gb|EH878476.1|EH878476
EST:     AAACGTTCTGAAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCG                         GAAACAAGATATCGACACAGACAGGTATAGGAACA
genomic: AAACGTTCTGAAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCGgtacaagatt ... atatttgcagGAAACAAGATATCGACACAGACAGGTATAGGAACA
EST: gi|124983299|gb|EL056040.1|EL056040
EST:     AAACGTTCTGAAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCG                         GAAACAAGATATCGACACAGACAG
genomic: AAACGTTCTGAAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCGgtacaagatt ... atatttgcagGAAACAAGATATCGACACAGACAG
EST: gi|125083403|gb|EL143975.1|EL143975
EST:     AAACGTTCTGAAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCG                         GAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTG
genomic: AAACGTTCTGAAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCGgtacaagatt ... atatttgcagGAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTG
EST: gi|124826376|gb|EH911242.1|EH911242
EST:     AAACGTTCTGAAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCG                         GAAACAAGATATCGACACAGACAGGTATAGGAA
genomic: AAACGTTCTGAAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCGgtacaagatt ... atatttgcagGAAACAAGATATCGACACAGACAGGTATAGGAA
EST: gi|124762688|gb|EH852818.1|EH852818
EST:     AAACGTTCTGAAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCG                         GAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG
genomic: AAACGTTCTGAAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCGgtacaagatt ... atatttgcagGAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG
EST: gi|124948553|gb|EL024292.1|EL024292
EST:     GTGATCGGTTTCTCCATCGTTATCTTCG                         GAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG
genomic: GTGATCGGTTTCTCCATCGTTATCTTCGgtacaagatt ... atatttgcagGAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG
EST: gi|125153086|gb|EL184407.1|EL184407
EST:     CGGTTTCTCCATCGTTATCTTCG                         GAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG
genomic: CGGTTTCTCCATCGTTATCTTCGgtacaagatt ... atatttgcagGAAACAAGATATCGACACAGACAGGTATAGGAACAGGAATAGCCATTGCTG