Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCTCAAGCCTGAGCAATTCAAGATTTTGATACACAAAATCCCTGCTTATTTTACGgtatgtacttcatcatttacagaagtttaaatataataccaatcatatggtttccacttgtgtgaaatgctgaagtttatgcacttttcttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G37850.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G37850.3 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv14s0006g01660.t01 (Vitis vinifera), 5'ss of exon 10
GGTCTCAAGCCTGAGCAATTCAAGATTTTGATACACAAAATCCCTGCTTATTTTACGgtatgtacttcatcatttacagaagtttaaatataataccaatcatatggtttccacttgtgtgaaatgctgaagtttatgcacttttcttgcag-------
||||     ||||| |||||||||||| |||| | |||||| ||||| ||||| |||||||| |  |  |   |||         |  | |   ||   |    | ||||| | | |  ||  | | |    |||||  | |    || |         
GGTCATTCTCCTGACCAATTCAAGATTGTGATGCCCAAAATTCCTGCATATTTCACGgtatgcatattcttccttattcct-cccacttgtgggacttttatggttgtttcta-tgggatggcaagatcttatttatatattaaaattacctttttttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86086903|gb|DR382662.1|DR382662
EST:     GCTTATTTTACG                         GGAACAGGAGATYTCATGACTGCTCTTCTACTTGGTTGGAGTAAT
genomic: GCTTATTTTACGgtatgtactt ... tttcttgcagGGAACAGGAGATCTCATGACTGCTCTTCTACTTGGTTGGAGTAAT
EST: gi|125259506|gb|EL273591.1|EL273591
EST:     AGCCTGAGCAATTCAAGATTTTGATACACAAAATCCCTGCTTATTTTACG                         GGAACAGGAGATCTCATGACTGCTCTTCTACTTGGTTGGAGTAA
genomic: AGCCTGAGCAATTCAAGATTTTGATACACAAAATCCCTGCTTATTTTACGgtatgtactt ... tttcttgcagGGAACAGGAGATCTCATGACTGCTCTTCTACTTGGTTGGAGTAA
EST: gi|86083486|gb|DR379245.1|DR379245
EST:     AGCCTGAGCAATTCAAGATTTTGATACACAAAATCCCTGCTTATTTTACG                         GGAACAGGAGATCTCATGACTGCTCTTCTACTTGGTTGGAGTAAT
genomic: AGCCTGAGCAATTCAAGATTTTGATACACAAAATCCCTGCTTATTTTACGgtatgtactt ... tttcttgcagGGAACAGGAGATCTCATGACTGCTCTTCTACTTGGTTGGAGTAAT