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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTCTAAAGGCAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAGCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACGgttagttctactactcatctctttcatctatacatgttaagtgtatttcaaaaatggttcaagatattgactcaaatactgtggaattag

Basic information

species Arabidopsis thaliana
transcript AT5G25980.3
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125048213|gb|EL120482.1|EL120482
EST:     GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACG                         GATTCAGTACCTCCGGTGG
genomic: GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACGgttagttcta ... gtggaattagGATTCAGTACCTCCGGTGG
EST: gi|125297850|gb|EL311935.1|EL311935
EST:     GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACG                         GATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT
genomic: GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACGgttagttcta ... gtggaattagGATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT
EST: gi|116446415|gb|EG489007.1|EG489007
EST:     GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACG                         GATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT
genomic: GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACGgttagttcta ... gtggaattagGATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT
EST: gi|116446282|gb|EG488874.1|EG488874
EST:     GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACG                         GATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT
genomic: GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACGgttagttcta ... gtggaattagGATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT
EST: gi|124935605|gb|EL012577.1|EL012577
EST:     GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACG                         GATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATT
genomic: GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACGgttagttcta ... gtggaattagGATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATT
EST: gi|116439047|gb|EG481639.1|EG481639
EST:     GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACG                         GATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT
genomic: GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACGgttagttcta ... gtggaattagGATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT
EST: gi|125311852|gb|EL325937.1|EL325937
EST:     GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACG                         GATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAG
genomic: GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACGgttagttcta ... gtggaattagGATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAG
EST: gi|124929333|gb|EL006888.1|EL006888
EST:     TACGGTGACCCTTTAATCTATGTCACCGAGAACG                         GTATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGAT
genomic: TACGGTGACCCTTTAATCTATGTCACCGAGAACGgttagttcta ... gtggaattagG-ATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGAT
EST: gi|124909227|gb|EH983307.1|EH983307
EST:     TGTCACCGAGAACG                         GATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT
genomic: TGTCACCGAGAACGgttagttcta ... gtggaattagGATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT
EST: gi|116446426|gb|EG489018.1|EG489018
EST:     GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACG                         GATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT
genomic: GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACGgttagttcta ... gtggaattagGATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT
EST: gi|125186929|gb|EL201883.1|EL201883
EST:     GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACG                         GATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAA
genomic: GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACGgttagttcta ... gtggaattagGATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAA
EST: gi|124922653|gb|EL000921.1|EL000921
EST:     AAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACG                         GATTTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGAT
genomic: AAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACGgttagttcta ... gtggaattagGA-TTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGAT
EST: gi|47828757|gb|CK118441.1|CK118441
EST:     GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACG                         GATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT
genomic: GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACGgttagttcta ... gtggaattagGATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT
EST: gi|116447714|gb|EG490306.1|EG490306
EST:     GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACG                         GATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT
genomic: GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACGgttagttcta ... gtggaattagGATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT
EST: gi|124724858|gb|EH816260.1|EH816260
EST:     GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACG                         GATTCAGTACCTCCGGTGG
genomic: GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACGgttagttcta ... gtggaattagGATTCAGTACCTCCGGTGG
EST: gi|125187405|gb|EL202359.1|EL202359
EST:     AAAACCAAATACGGTGACCCTTTAATCTATGTCACCGTAGAACG                         GATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGAT
genomic: AAAACCAAATACGGTGACCCTTTAATCTATGTCACCG-AGAACGgttagttcta ... gtggaattagGATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGAT
EST: gi|116446304|gb|EG488896.1|EG488896
EST:     GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACG                         GATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT
genomic: GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACGgttagttcta ... gtggaattagGATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT
EST: gi|116439131|gb|EG481723.1|EG481723
EST:     GCACTTCAAAACCAAATACGGTGACCCTTTAATTTATGTCACCGAGAACG                         GATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT
genomic: GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACGgttagttcta ... gtggaattagGATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT
EST: gi|47827929|gb|CK117613.1|CK117613
EST:     GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACG                         GATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT
genomic: GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACGgttagttcta ... gtggaattagGATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT
EST: gi|116446293|gb|EG488885.1|EG488885
EST:     GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACG                         GATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT
genomic: GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACGgttagttcta ... gtggaattagGATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT
EST: gi|124967280|gb|EL041324.1|EL041324
EST:     GGTGACCCTTTAATCTATGTCACCGAGAACG                         GATTTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGAT
genomic: GGTGACCCTTTAATCTATGTCACCGAGAACGgttagttcta ... gtggaattagGA-TTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGAT
EST: gi|116446271|gb|EG488863.1|EG488863
EST:     GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACG                         GATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT
genomic: GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACGgttagttcta ... gtggaattagGATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT
EST: gi|124935780|gb|EL012738.1|EL012738
EST:     GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACG                         GATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT
genomic: GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACGgttagttcta ... gtggaattagGATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT
EST: gi|116444210|gb|EG486802.1|EG486802
EST:     GCACTTCAAAACCAAATACGGTGACCCTTTAATTTATGTCACCGAGAACG                         GATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT
genomic: GCACTTCAAAACCAAATACGGTGACCCTTTAATCTATGTCACCGAGAACGgttagttcta ... gtggaattagGATTCAGTACCTCCGGTGGCCCCATACCCTTCACCGAAGCATTTCACGATT