Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGGGTTACTTTGCTTATATGGCGATAGACAGTCTCCCGGGAAACCAATTTTGGGAGAGATTGTTGCTTCTCTTTATTCCTCCTAGCCGGCTTTTCAAgttagttaatatatatcttttctttagtctatttttagaaaggtctgcctttctcaatcactggtttcatctaaatgcag

Basic information

species Arabidopsis thaliana
transcript AT5G25430.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G25430.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os01g08020.1 (Oryza sativa), 5'ss of exon 11
TTTGGGGTTACTTTGCTTATATGGCGATAGACAGTCTCCCGGGAAACCAATTTTGGGAGAGATTGTTGCTTCTCTTTATTCCTCCTAGCCGGCTTTTCAAgtta-gttaatatatatcttttctttagtctatttttagaaaggtctgcctttctcaatcact---ggtttcatctaaatgcag--------------------------------------------------------------------------------
| ||||||||||||||||||||||| || |||||||| || || ||||| |||||||| ||| |    ||| | || || ||  | ||||| |  | ||||| |  |   ||| |  | | | ||||  | ||||  | || |   |  | | ||  |  |||   |||     |||  |||                                                                                  
TCTGGGGTTACTTTGCTTATATGGCCATTGACAGTCTACCTGGCAACCAGTTTTGGGAAAGAATAAGACTTATATTCATCCCATCAAGCCGACGCTACAAgtaatatctctatctg-catctgtttaccccatttgaacaatgaaattgcatgcttgactacttgcggtgcagcctatgtgcctccttttggattaatcgtaagataatccattttttgtcaaaacagtgattaacagctcacactatgcttcaacatttgcag

upper sequence: AT5G25430.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os05g08430.1 (Oryza sativa), 5'ss of exon 10
TTTGGGGTTACTTTGCTTATATGGCGATAGACAGTCTCCCGGGAAACCAATTTTGGGAGAGATTGTTGCTTCTCTTTATTCCTCCTAGCCGGCTTTTCAAgttagttaatatatatcttttctttagtctatttttagaaaggtctgcctttctcaatcactggtttcatctaaat-gcag----------------------
||||||||||||||||||||||| | || |||||  | ||||||||||| || ||||||||       ||||| || ||| | |||   ||||  | ||||| ||     || || ||    | | || | | || |||   | |  | |||   ||     ||     | || || | ||                      
TTTGGGGTTACTTTGCTTATATGTCCATTGACAGCGTTCCGGGAAACCAGTTCTGGGAGAGGACACAACTTCTGTTCATTTCACCTCAACGGCGCTACAAgtaagccctcatctagctgcgttct-gtatctattcagacgagcc--cttttaaaaactttagggcatgtttagattgtagccaaaataaatcttaccgaatg