Sequence
atgc intronic sequence ATGC exonic sequenceAATAAGACGCTGATAGCTGTAAAGGCACCGCATGGAACAACTCTTGAGGTTCCAGATCCTGATGAGgtaagcttaagagcgcacaaaaccaaatgagcgatgcactgtctgtaacgattctcacctcttatcctgccattaatcag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G22220.3 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G22220.3 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GRMZM2G041701_T02 (Zea mays), 5'ss of exon 10
AATAAGACGCTGATAGCTGTAAAGGCACCGCATGGAACAACTCTTGAGGTTCCAGATCCTGATGAGgta---agcttaagagcgcacaaaaccaaatgagcgatgcactgtctgtaacgattctcacctcttat-----cctgccat-taatcag
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AATGAAACACTAATTGCAATTAAAGCACCTCATGGTACTACTCTTGAAGTACCAGATCCTGATGAGgtaggaagcattaaataaatgagttttgcatacacaaataaatggctgttctaatttatggttcttgtgtgtttctgctgcatgcacag
upper sequence: AT5G22220.3 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GRMZM2G052515_T01 (Zea mays), 5'ss of exon 10
AATAAGACGCTGATAGCTGTAAAGGCACCGCATGGAACAACTCTTGAGGTTCCAGATCCTGATGAGgtaagcttaagagcgcacaaaaccaaatgagcgatgc--actgtctgtaacgattctcacctcttatcc-tgccattaatcag---------
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AATCAGACTCTAATTGCTATAAAAGCACCGCATGGCACAACTTTGGAAGTCCCAGATCCTGATGAGgtgggtctgcaaaaccat----ccttgtttttcatactgggtgtcctagagggatgttacatatcgttaatggaagcaattttcttttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124897636|gb|EH973850.1|EH973850EST: GAACAACTCTTGAGGTTCCAGATCCTGATGAG GCTGGTGGTTATCAGAGGAGGTACAGAATCATTCTGAGAAGCACAATGGGA
genomic: GAACAACTCTTGAGGTTCCAGATCCTGATGAGgtaagcttaa ... cattaatcagGCTGGTGGTTATCAGAGGAGGTACAGAATCATTCTGAGAAGCACAATGGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATAAGACGCTGATAGCTGTAAAGGCACCGCATGGAACAACTCTTGAGGTTCCAGATCCTGATGAGgtaagcttaagagcgcacaaaaccaaatgagcgatgcactgtctgtaacgattctcacctcttatcctgccattaatcag
- - - - - - - - - - - - - - - CATGGA