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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGAATAGTAAAACTTGATCAGAATATAGAGGAGAGAGTTAAAAAAGCTTCATCAAAAGGGTGTGTGCTTCGTTATGTCTGTGTGATTGAGGGTTCAAGgtaataacggttacctttactctcacagtcaataatcaataacgtaaagaaatttgtttcaaggctaatttgatgtagttagagagaacaattgtttcctaattatattggtacatgcaaatgctagtgtacaatgtcggaatcttctgattttgaatttcacgttctctctgcag

Basic information

species Arabidopsis thaliana
transcript AT5G21060.3
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G21060.3 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv06s0009g01460.t01 (Vitis vinifera), 5'ss of exon 9
ATGGAATAGTAAAACTTGATCAGAATATAGAGGAGAGAGTTAAAAAAGCTTCATCAAAAGGGTGTGTGCTTCGTTATGTCTGTGTGATTGAGGGTTCAAGgtaataacggt-tacctttactctcacagtcaataatcaataacgtaaagaaatttgtttcaaggctaatttgatg--tagttagagagaacaattgtttcctaattatattggtacatgcaaatgctagtgtacaatgtcggaatcttctgattttgaatttcacgttctctctgcag
 |||  |  |    |||||| |  ||||  | || |||||| |||| ||| | | | | |||   |||||||||||||||||||| |||||||| |||||||| |   ||| | | |||  | |     |  | | |     |   |   |||| | || |     |||||  ||     |||     |||  | ||                                                                                  
GTGGGCTCTTGTTGCTTGATAATGATATCCAAGAAAGAGTTCAAAAGGCTGCGTTAGATGGGAAGGTGCTTCGTTATGTCTGTGTTATTGAGGGCTCAAGgtattctaggtgttcattttttattgtcattgaaattttgatagtcagtaaaatgttttccttttataattcaatcatctgtttttctgaatgagtgagc-------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085120|gb|DR380879.1|DR380879
EST:     TCATCAAAAGGGTGTGTGCTTCGTTATGTCTGTGTGATTGAGGGTTCAAG                         CGTTCAAGTTGGCATTCGAGAAGTTTCAAAAGATTCACCATTGGGACGGCT
genomic: TCATCAAAAGGGTGTGTGCTTCGTTATGTCTGTGTGATTGAGGGTTCAAGgtaataacgg ... ctctctgcagCGTTCAAGTTGGCATTCGAGAAGTTTCAAAAGATTCACCATTGGGACGGCT
EST: gi|125293660|gb|EL307745.1|EL307745
EST:     TCAAAAGGGTGTGTGCTTCGTTATGTCTGTGTGATTGAGGGTTCAAG                         CGTTCAAGTTGGCATTCGAGAAGTTTCAAAAGATTCACCATTGGGACGGCT
genomic: TCAAAAGGGTGTGTGCTTCGTTATGTCTGTGTGATTGAGGGTTCAAGgtaataacgg ... ctctctgcagCGTTCAAGTTGGCATTCGAGAAGTTTCAAAAGATTCACCATTGGGACGGCT
EST: gi|164039234|gb|ES154011.1|ES154011
EST:     CAAAAGGGTGTGTGCTTCGTTATGTCTGTGTGATTGAGGGTTCAAG                         CGTTCAAGTTGGCATTCGAGAAGTTTCAAAAGATTCACCATTGGGACGGCT
genomic: CAAAAGGGTGTGTGCTTCGTTATGTCTGTGTGATTGAGGGTTCAAGgtaataacgg ... ctctctgcagCGTTCAAGTTGGCATTCGAGAAGTTTCAAAAGATTCACCATTGGGACGGCT
EST: gi|86084658|gb|DR380417.1|DR380417
EST:     TCATCAAAAGGGTGTGTGCTTCGTTATGTCTGTGTGATTGAGGGTTCAAG                         CGTTCAAGTTGGCATTCGAGAAGTTTCAAAAGATTCACCATTGGGACGGCT
genomic: TCATCAAAAGGGTGTGTGCTTCGTTATGTCTGTGTGATTGAGGGTTCAAGgtaataacgg ... ctctctgcagCGTTCAAGTTGGCATTCGAGAAGTTTCAAAAGATTCACCATTGGGACGGCT