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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCAATGGCACAGAAAATGACCCAACGTCCTATGAAGGGGATGCTCACAGGCCCTGTTACAATTCTCAATTGGTCCTTTGTTAGAAATGACCAACCCAGgtgtgacatctaagcctctcaagcttcctttcgctgtatggtattccatttcaccattcttgttgtttgtag

Basic information

species Arabidopsis thaliana
transcript AT5G20980.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G20980.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA04G30350.1 (Glycine max), 5'ss of exon 10
CGTCAATGGCACAGAAAATGACCCAACGTCCTATGAAGGGGATGCTCACAGGCCCTGTTACAATTCTCAATTGGTCCTTTGTTAGAAATGACCAACCCAGgtgtgaca-------tctaagcctctcaagct------------tcctttcgctgtatggtattccatttcaccat-tcttgttgtttgtag
| ||||  || || |   ||||| |||| || |||||||| ||||| || ||||||||||| ||||| || ||||||||||||||| |||||||||| |||| ||| |       | || | ||  || |||            |  ||| |||| ||     | ||||| ||  | |||  |||||  |||
CTTCAACTGCTCAAAGTTTGACCAAACGACCAATGAAGGGAATGCTTACTGGCCCTGTTACTATTCTGAACTGGTCCTTTGTTAGAGATGACCAACCAAGgtatgaaaataatcctttatgactaccatgctgatttaaatgatttgttttgctggatatctgttcatttaacattatctatttgttattag

upper sequence: AT5G20980.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA13G15140.1 (Glycine max), 5'ss of exon 10
CGTCAATGGCACAGAAAATGACCCAACGTCCTATGAAGGGGATGCTCACAGGCCCTGTTACAATTCTCAATTGGTCCTTTGTTAGAAATGACCAACCCAGgtgtgacatctaagcctctcaagcttcctttcgctgtatggtattccatttcacc--attcttgttgtttgtag----------------
| ||||  || || |   ||||| |||| || |||||||| ||||| || ||||||||||| ||||| || ||||||||||||||| ||||||| || |||| ||| |  |||  || |   ||| |||| |    |    |  ||  |||  |   ||   ||||  ||  |                 
CTTCAACTGCTCAAAGTTTGACCAAACGACCAATGAAGGGAATGCTTACTGGCCCTGTTACTATTCTGAACTGGTCCTTTGTTAGAGATGACCAGCCAAGgtatgaaaa-taattctttatggctaccttgcaggtttgaatgatcgtttttgctggatatctgttcatttaacattatcttgttattag

upper sequence: AT5G20980.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv06s0009g01080.t01 (Vitis vinifera), 5'ss of exon 10
CGTCAATGGCACAGAAAATGACCCAACGTCCTATGAAGGGGATGCTCACAGGCCCTGTTACAATTCTCAATTGGTCCTTTGTTAGAAATGACCAACCCAGgtgtgacatctaagcctctcaagcttcctttcgctgtatggtattccatttcaccattcttgttgtttgtag-------------------
| |||||||| ||||  |||||  | || || |||||||| ||||| || || |||||||| || || || ||||| ||||| ||||||||||| |||||||  || |   |||||   |||   |   |  |  |  |  | | | ||||    ||  |  |||  | ||                    
CCTCAATGGCTCAGAGCATGACTAAGCGCCCAATGAAGGGAATGCTAACTGGACCTGTTACCATCCTGAACTGGTCTTTTGTCAGAAATGACCAGCCCAGgtaagaaaatcaagccaaccaaatctatctcagtcgatt--tctacgattttgttataatgattgaatctaatgcttttacctgatcttag