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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGAAGTTGTTCTTAAGCGGTGCTGGCTAGCTCGGTATTGGGGTCTAGCTTCCAGATATGgtaaggagtaacaaacatctgcttaacgacataactagaactttcatgccatcgtgtatctttgcttcttgacatatgtgcatatttgcatttcag

Basic information

species Arabidopsis thaliana
transcript AT5G13260.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G13260.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA10G44630.1 (Glycine max), 5'ss of exon 10
GAGGAAGTTGTTCTTAAGCGGTGCTGGCTAGCTCGGTATTGGGGTCTAGCTTCCAGATATGgtaaggagtaaca------aacatctgcttaacgacataactagaactttcatgccatcgtgtatctttgcttcttgacatatgtgcatatttgcatttcag-
|| ||||||||||| ||| |||| ||||| ||||| ||||||||| ||||| | | ||||||||||  ||          ||| |||  ||  |    |   ||| | |  |||   ||    | |||      |  |||  ||| ||  ||||  || |||  
GAAGAAGTTGTTCTAAAGAGGTGTTGGCTTGCTCGTTATTGGGGTTTAGCTGCAAAATATGgtaagccgttgtctgttttaacttcttttttcctttttttttaggagtagcat--tattacatctctaaatgacacgactaatgagc-cattttaatatcaat

upper sequence: AT5G13260.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv01s0244g00070.t01 (Vitis vinifera), 5'ss of exon 10
GAGGAAGTTGTTCTTAAGCGGTGCTGGCTAGCTCGGTATTGGGGTCTAGCTTCCAGATATGgtaagga-gtaacaaacatctgcttaa---cgacataactagaactttc--atgccatcgtgtatctt-tgcttcttgacatatgtgcatatttgcatttcag
|||||||||||||||||| |||| ||||| ||||| ||||||||| ||||| | ||  |||||||  | || || |   | | |  |    |    |||||     |||   | |  ||  |   || | |     || ||     | |  |||| | |||   
GAGGAAGTTGTTCTTAAGAGGTGTTGGCTTGCTCGCTATTGGGGTTTAGCTGCAAGGCATGgtaatcatgttaccattgtttccacacaccccttttaacttagtttttagaaagaaataataggtcgtgtatgatttaaccagcttac-catttacctttt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124953630|gb|EL028794.1|EL028794
EST:     CTCGGTATTGGGGTCTAGCTTCCAGATATG                         GAATATGTTCGGATATAGCTACGTCCAAGTACGAATACTGGTCATCTCTGG
genomic: CTCGGTATTGGGGTCTAGCTTCCAGATATGgtaaggagta ... tgcatttcagGAATATGTTCGGATATAGCTACGTCCAAGTACGAATACTGGTCATCTCTGG