Sequence
atgc intronic sequence ATGC exonic sequenceGCATAAGCATTGTTGCTGATAAAGGTCTCAAGAAGCCTCTTTTCACCTCTGCCCGCTTGAAGAAAGGGGAAGTTTTGTACTTAGAAACTCATTCATGCAGgtatgcacatcacatgtttcttttatctgacattaatgacataagacgctgaatctaatctgtgtatgcaaaaag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G08450.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G08450.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA20G35720.1 (Glycine max), 5'ss of exon 9
GCATAAGCATTGTTGCTGATAAAGGTCTCAAGAAGCCTCTTTTCACCTCTGCCCGCTTGAAGAAAGGGGAAGTTTTGTACTTAGAAACTCATTCATGCAGgta-----tgcacatcacatgtttcttttatctgac-attaatgacataa--gacgctgaatctaatctgtgtatgcaaaaag------------------
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GTATAAGCACTGTTGCTGACAAGGGTTTAAAAAAGCCACTTTACACATCTGCACGTTTGAAGAAGGGGGAAGTTTTGTATTTGGAGACACATTTGTCCAGgtactttttatatggaagttcttgttctaaatcaacgatctgtatttcaactgtcactgaat-taattgttaaatgtcacatgtaagtgcaacaggaatgt
upper sequence: AT5G08450.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv07s0130g00270.t01 (Vitis vinifera), 5'ss of exon 9
GCATAAGCATTGTTGCTGATAAAGGTCTCAAGAAGCCTCTTTTCACCTCTGCCCGCTTGAAGAAAGGGGAAGTTTTGTACTTAGAAACTCATTCATGCAGgtatgcacatca----cat-------gtttcttttatctgacattaatgacataagacgctgaatctaatctgtgtatgcaaaaag--------------
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GCATAAGCATTGTTGCTGACAAAGGCCTAAAGAAGCCCCTTTATACATCTGCACGCTTGAAGAAGGGAGAAGTTTTGTATTTAGAAACACATTCCCGCAGgtattcactttattgacattgagtgagattctggtggctcttcttttgtaccttagatctaagttcccatttttccatggaatgagatcatatttcttttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116448742|gb|EG491334.1|EG491334EST: GCCCGCTTGAAGAAAGGGGAAGTTTTGTACTTAGAAACTCATTCATGCAG GTATGAGTTTTGTTTCGCAGGAGAGAAGCCCATCAAAGCAATCCAAGCCTC
genomic: GCCCGCTTGAAGAAAGGGGAAGTTTTGTACTTAGAAACTCATTCATGCAGgtatgcacat ... atgcaaaaagGTATGAGCTCTGTTTCGCAGGAGAGAAGACCATCAAAGCAATCCAAGCCTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCATAAGCATTGTTGCTGATAAAGGTCTCAAGAAGCCTCTTTTCACCTCTGCCCGCTTGAAGAAAGGGGAAGTTTTGTACTTAGAAACTCATTCATGCAGgtatgcacatcacatgtttcttttatctgacattaatgacataagacgctgaatctaatctgtgtatgcaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA