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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCCGCCTTTTAGGGCGTGTGATGGCCAAAGCACTTCAAGATGGACGGCTATTGGACGTCCCATTGAGTACAGCGTTTTATAAACTTATTCTTGGTCAAgtgagttttttttttactactagtgtttgtttagttaaaagtgaaatagtggtttctactttttcacttctgtcggcctttgctaataagttcgtcctctttcattgactaagcag

Basic information

species Arabidopsis thaliana
transcript AT4G38600.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G38600.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA11G11490.1 (Glycine max), 5'ss of exon 10
TTTCCGCCTTTTAGGGCGTGTGATGGCCAAAGCACTTCAAGATGGACGGCTATTGGACGTCCCATTGAGTACAGCGTTTTATAAACTTATTCTTGGTCAAgtgagttttttttttactactagtgt-ttgtttagttaaaagtgaaatagtggtttctactttttcacttctgtcggcctttgctaataagttcgtcctctttcattgactaagcag
|||||| || ||||| ||||| ||||| || || |||||||||||||| ||||||||  | ||| ||      || |||||||| ||| ||||||||||||| |||| |      | |  |  ||| || | |  ||  | ||| |      | ||    |||   |  | | |          | |||  ||                        
TTTCCGACTATTAGGCCGTGTAATGGCTAAGGCTCTTCAAGATGGACGCCTATTGGATTTACCAATGTCAGTGGCATTTTATAAGCTTGTTCTTGGTCAAgtaagttatga----aatgttgatgtcttatctgatttgatgtgcatcttaaggttgatttttagtatgtatatatttaacccttgatatattgcag--------------------

upper sequence: AT4G38600.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv03s0038g02340.t01 (Vitis vinifera), 5'ss of exon 10
TTTCCGCCTTTTAGGGCGTGTGATGGCCAAAGCACTTCAAGATGGACGGCTATTGGACGTCCCATTGAGTACAGCGTTTTATAAACTTATTCTTGGTCAAgtgagtttttt------ttttactactagtgtttgtttagttaaaagtgaaatagtggtttctactttttcacttctgtcg-------gcctttgctaataagttcgtcctctttcattgactaagcag------------------------------
||| ||| |  | ||||||||||| |||||||| ||||||||||| ||||| |||||| | |||||    |||||  |||| || ||| | |||||||||||  |||  ||      | |||    || |  ||   ||||   ||   || |  ||     | || |||   | |||||        ||  |||    || ||  || | | | | |    |  |                                 
TTTTCGCTTGGTTGGGCGTGTGATTGCCAAAGCCCTTCAAGATGGGCGGCTCTTGGACCTGCCATTATCGACAGCACTTTACAAGCTTGTGCTTGGTCAAgtatgttaattgtgttgtcttaaatttacttctttcgtagtattaacaaaatttttgaaaattgctgttttgttgctgtcattttgctgctgttgtagttatgtgtgtgcgcgtgcgtgcttttggtttgtgacattcagctatctcattttcttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164174803|gb|ES065138.1|ES065138
EST:     TATTGGACGTCCCATTGAGTACAGCGTTTTATAAACTTATTCTTGGTCAA                         GAGCTTGATTT
genomic: TATTGGACGTCCCATTGAGTACAGCGTTTTATAAACTTATTCTTGGTCAAgtgagttttt ... gactaagcagGAGCTTGATTT
EST: gi|47830638|gb|CK120322.1|CK120322
EST:     TATTGGACGTCCCATTGAGTACAGCGTTTTATAAACTTATTCTTGGTCAA                         GAGCTTGATTTGCATGATATTGTATTATTTGACGCTGAACTTGGCAAGACC
genomic: TATTGGACGTCCCATTGAGTACAGCGTTTTATAAACTTATTCTTGGTCAAgtgagttttt ... gactaagcagGAGCTTGATTTGCATGATATTGTATTATTTGACGCTGAACTTGGCAAGACC